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Transforming natural language questions into SQL queries is crucial for precise data retrieval from electronic health record (EHR) databases. A significant challenge in this process is detecting and rejecting unanswerable questions that…

Databases · Computer Science 2024-06-21 Hajung Kim , Chanhwi Kim , Hoonick Lee , Kyochul Jang , Jiwoo Lee , Kyungjae Lee , Gangwoo Kim , Jaewoo Kang

Despite extensive research on a wide range of question answering (QA) systems, most existing work focuses on answer containment-i.e., assuming that answers can be directly extracted and/or generated from documents in the corpus. However,…

Computation and Language · Computer Science 2026-02-03 Jamshid Mozafari , Hamed Zamani , Guido Zuccon , Adam Jatowt

HL7's Fast Healthcare Interoperability Resources (FHIR) standard is designed to provide a consistent way in which to represent and exchange healthcare data, such as electronic health records (EHRs). SMART--on--FHIR (SoF) technology uses…

Software Engineering · Computer Science 2020-01-24 Martin Chapman , Vasa Curcin , Elizabeth I Sklar

We study a new problem setting of question answering (QA), referred to as DocTabQA. Within this setting, given a long document, the goal is to respond to questions by organizing the answers into structured tables derived directly from the…

Computation and Language · Computer Science 2024-08-22 Haochen Wang , Kai Hu , Haoyu Dong , Liangcai Gao

Text-to-SQL models are pivotal for making Electronic Health Records (EHRs) accessible to healthcare professionals without SQL knowledge. With the advancements in large language models, these systems have become more adept at translating…

Computation and Language · Computer Science 2024-05-21 Yongrae Jo , Seongyun Lee , Minju Seo , Sung Ju Hwang , Moontae Lee

While increasing patients' access to medical documents improves medical care, this benefit is limited by varying health literacy levels and complex medical terminology. Large language models (LLMs) offer solutions by simplifying medical…

Computation and Language · Computer Science 2025-02-06 Amin Dada , Osman Alperen Koras , Marie Bauer , Amanda Butler , Kaleb E. Smith , Jens Kleesiek , Julian Friedrich

We describe our system for the ArchEHR-QA Shared Task on answering clinical questions using electronic health records (EHRs). Our approach uses large language models in two steps: first, to find sentences in the EHR relevant to a…

Computation and Language · Computer Science 2025-06-09 Sara Shields-Menard , Zach Reimers , Joshua Gardner , David Perry , Anthony Rios

Trustworthiness in healthcare question-answering (QA) systems is important for ensuring patient safety, clinical effectiveness, and user confidence. As large language models (LLMs) become increasingly integrated into medical settings, the…

Computation and Language · Computer Science 2025-11-04 Yinuo Wang , Baiyang Wang , Robert E. Mercer , Frank Rudzicz , Sudipta Singha Roy , Pengjie Ren , Zhumin Chen , Xindi Wang

Effective patient care in digital healthcare requires large language models (LLMs) that not only answer questions but also actively gather critical information through well-crafted inquiries. This paper introduces HealthQ, a novel framework…

Computation and Language · Computer Science 2025-02-26 Ziyu Wang , Hao Li , Di Huang , Hye-Sung Kim , Chae-Won Shin , Amir M. Rahmani

The inherent complexity of structured longitudinal Electronic Health Records (EHR) data poses a significant challenge when integrated with Large Language Models (LLMs), which are traditionally tailored for natural language processing.…

Computation and Language · Computer Science 2024-02-13 Yinghao Zhu , Zixiang Wang , Junyi Gao , Yuning Tong , Jingkun An , Weibin Liao , Ewen M. Harrison , Liantao Ma , Chengwei Pan

The lack of standardized evaluation benchmarks in the medical domain for text inputs can be a barrier to widely adopting and leveraging the potential of natural language models for health-related downstream tasks. This paper revisited an…

Computation and Language · Computer Science 2025-04-30 Jesus Lovon , Thouria Ben-Haddi , Jules Di Scala , Jose G. Moreno , Lynda Tamine

This work presents a novel architecture for building Retrieval-Augmented Generation (RAG) systems to improve Question Answering (QA) tasks from a target corpus. Large Language Models (LLMs) have revolutionized the analyzing and generation…

Computation and Language · Computer Science 2025-01-09 Binita Saha , Utsha Saha , Muhammad Zubair Malik

While Large Language Models (LLMs) achieve expert-level performance on standard medical benchmarks through single-hop factual recall, they severely struggle with the complex, multi-hop diagnostic reasoning required in real-world clinical…

Computation and Language · Computer Science 2026-03-16 Xing Zi , Xinying Zhou , Jinghao Xiao , Catarina Moreira , Mukesh Prasad

Large Language Models (LLMs), acting as a powerful reasoner and generator, exhibit extraordinary performance across various natural language tasks, such as question answering (QA). Among these tasks, Multi-Hop Question Answering (MHQA)…

Computation and Language · Computer Science 2023-09-25 Yin Zhu , Zhiling Luo , Gong Cheng

Electronic health records (EHRs) house crucial patient data in clinical notes. As these notes grow in volume and complexity, manual extraction becomes challenging. This work introduces a natural language interface using large language…

Information Retrieval · Computer Science 2024-07-03 Ran Elgedawy , Ioana Danciu , Maria Mahbub , Sudarshan Srinivasan

The growing volume of academic papers has made it increasingly difficult for researchers to efficiently extract key information. While large language models (LLMs) based agents are capable of automating question answering (QA) workflows for…

Computation and Language · Computer Science 2026-03-31 Tiancheng Huang , Ruisheng Cao , Yuxin Zhang , Zhangyi Kang , Zijian Wang , Chenrun Wang , Yijie Luo , Hang Zheng , Lirong Qian , Lu Chen , Kai Yu

We present FoQA, a Faroese extractive question-answering (QA) dataset with 2,000 samples, created using a semi-automated approach combining Large Language Models (LLMs) and human validation. The dataset was generated from Faroese Wikipedia…

Computation and Language · Computer Science 2025-02-12 Annika Simonsen , Dan Saattrup Nielsen , Hafsteinn Einarsson

Large Language Models (LLMs) have achieved remarkable performance on a wide range of Natural Language Processing (NLP) benchmarks, often surpassing human-level accuracy. However, their reliability in high-stakes domains such as medicine,…

Electronic health records (EHRs) contain vast amounts of complex data, but harmonizing and processing this information remains a challenging and costly task requiring significant clinical expertise. While large language models (LLMs) have…

Computation and Language · Computer Science 2024-07-02 João Matos , Jack Gallifant , Jian Pei , A. Ian Wong

Electronic health records (EHRs) contain valuable patient data for health-related prediction tasks, such as disease prediction. Traditional approaches rely on supervised learning methods that require large labeled datasets, which can be…

Computation and Language · Computer Science 2024-03-26 Hejie Cui , Zhuocheng Shen , Jieyu Zhang , Hui Shao , Lianhui Qin , Joyce C. Ho , Carl Yang