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Related papers: FHIRPath-QA: Executable Question Answering over FH…

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Despite the impressive performance of LLM-powered agents, their adoption for Electronic Health Record (EHR) data access remains limited by the absence of benchmarks that adequately capture real-world clinical data access flows. In practice,…

Artificial Intelligence · Computer Science 2026-03-03 Gyubok Lee , Woosog Chay , Heeyoung Kwak , Yeong Hwa Kim , Haanju Yoo , Oksoon Jeong , Meong Hi Son , Edward Choi

Electronic Health Records (EHRs), which contain patients' medical histories in various multi-modal formats, often overlook the potential for joint reasoning across imaging and table modalities underexplored in current EHR Question Answering…

Computation and Language · Computer Science 2023-12-27 Seongsu Bae , Daeun Kyung , Jaehee Ryu , Eunbyeol Cho , Gyubok Lee , Sunjun Kweon , Jungwoo Oh , Lei Ji , Eric I-Chao Chang , Tackeun Kim , Edward Choi

Medical question answer (QA) assistants respond to lay users' health-related queries by synthesizing information from multiple sources using natural language processing and related techniques. They can serve as vital tools to alleviate…

Computation and Language · Computer Science 2024-10-01 Prakash Chandra Sukhwal , Vaibhav Rajan , Atreyi Kankanhalli

The exponential growth of AI in science necessitates efficient and scalable solutions for retrieving and preserving research information. Here, we present a tool for the development of a customized question-answer (QA) dataset, called…

Information Retrieval · Computer Science 2025-02-25 Qiming Liu , Zhongzheng Niu , Siting Liu , Mao Tian

Electronic health records (EHRs) contain a vast amount of high-dimensional multi-modal data that can accurately represent a patient's medical history. Unfortunately, most of this data is either unstructured or semi-structured, rendering it…

Computation and Language · Computer Science 2023-12-06 Ashwyn Sharma , David I. Feldman , Aneesh Jain

An intelligent machine that can answer human questions based on electronic health records (EHR-QA) has a great practical value, such as supporting clinical decisions, managing hospital administration, and medical chatbots. Previous…

Computation and Language · Computer Science 2021-11-30 Seongsu Bae , Daeyoung Kim , Jiho Kim , Edward Choi

In this study, we investigated the ability of the large language model (LLM) to enhance healthcare data interoperability. We leveraged the LLM to convert clinical texts into their corresponding FHIR resources. Our experiments, conducted on…

Computation and Language · Computer Science 2023-10-23 Yikuan Li , Hanyin Wang , Halid Yerebakan , Yoshihisa Shinagawa , Yuan Luo

Clinical question answering systems have the potential to provide clinicians with relevant and timely answers to their questions. Nonetheless, despite the advances that have been made, adoption of these systems in clinical settings has been…

This paper develops the first question answering dataset (DrugEHRQA) containing question-answer pairs from both structured tables and unstructured notes from a publicly available Electronic Health Record (EHR). EHRs contain patient records,…

Artificial Intelligence · Computer Science 2022-05-04 Jayetri Bardhan , Anthony Colas , Kirk Roberts , Daisy Zhe Wang

Objective: Large language models (LLMs) are increasingly applied in biomedical settings, and existing benchmark datasets have played an important role in supporting model development and evaluation. However, these benchmarks often have…

Computation and Language · Computer Science 2026-01-21 Kriti Bhattarai , Vipina K. Keloth , Donald Wright , Andrew Loza , Yang Ren , Hua Xu

Medical question-answering (QA) is a critical task for evaluating how effectively large language models (LLMs) encode clinical knowledge and assessing their potential applications in medicine. Despite showing promise on multiple-choice…

Computation and Language · Computer Science 2025-03-06 Guangfu Guo , Kai Zhang , Bryan Hoo , Yujun Cai , Xiaoqian Lu , Nanyun Peng , Yiwei Wang

In emergency situations, every second counts. The deployment of Large Language Models (LLMs) in time-sensitive, low or zero-connectivity environments remains limited. Current models are computationally intensive and unsuitable for low-tier…

Computation and Language · Computer Science 2025-11-04 Saiyma Sittul Muna , Rezwan Islam Salvi , Mushfiqur Rahman Mushfique , Ajwad Abrar

In today's digital world, seeking answers to health questions on the Internet is a common practice. However, existing question answering (QA) systems often rely on using pre-selected and annotated evidence documents, thus making them…

Computation and Language · Computer Science 2024-04-15 Juraj Vladika , Florian Matthes

Electronic health record (EHR) data is an essential data source for machine learning for health, but researchers and clinicians face steep barriers in extracting and validating EHR data for modeling. Existing tools incur trade-offs between…

Human-Computer Interaction · Computer Science 2025-11-13 Ziyong Ma , Richard D. Boyce , Adam Perer , Venkatesh Sivaraman

Patient portals now give individuals direct access to their electronic health records (EHRs), yet access alone does not ensure patients understand or act on the complex clinical information contained in these records. The ArchEHR-QA 2026…

Computation and Language · Computer Science 2026-04-30 Md Biplob Hosen , Md Alomgeer Hussein , Md Akmol Masud , Omar Faruque , Tera L Reynolds , Lujie Karen Chen

Electronic health record (EHR) question answering is often handled by LLM-based pipelines that are costly to deploy and do not explicitly leverage the hierarchical structure of clinical data. Motivated by evidence that medical ontologies…

Artificial Intelligence · Computer Science 2026-04-24 Yuyu Liu , Sarang Rajendra Patil , Mengjia Xu , Tengfei Ma

Background: Extractive question-answering (EQA) is a useful natural language processing (NLP) application for answering patient-specific questions by locating answers in their clinical notes. Realistic clinical EQA can have multiple answers…

Computation and Language · Computer Science 2023-06-27 Sungrim Moon , Huan He , Hongfang Liu , Jungwei W. Fan

Objective: Question answering (QA) systems have the potential to improve the quality of clinical care by providing health professionals with the latest and most relevant evidence. However, QA systems have not been widely adopted. This…

Computation and Language · Computer Science 2024-02-06 Gregory Kell , Angus Roberts , Serge Umansky , Linglong Qian , Davide Ferrari , Frank Soboczenski , Byron Wallace , Nikhil Patel , Iain J Marshall

Question Answering on Electronic Health Records (EHR-QA) has a significant impact on the healthcare domain, and it is being actively studied. Previous research on structured EHR-QA focuses on converting natural language queries into query…

Computation and Language · Computer Science 2022-04-18 Daeyoung Kim , Seongsu Bae , Seungho Kim , Edward Choi

Fast Healthcare Interoperability Resources (FHIR) is the dominant standard for interoperable exchange of healthcare data. In FHIR, electronic health records form a directed graph of resources. Answering clinically meaningful questions over…

Machine Learning · Computer Science 2026-05-15 Marius S. Knorr , Robert Müller , Jan P. Bremer , Nils Schweingruber