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Microdialysis is a well-established method for in vivo neurochemical measurements of small molecules, with implanted concentric-design probes offering minimized tissue damage and good temporal and spatial resolution. However, the large…

Quantitative Methods · Quantitative Biology 2021-09-10 Damon Vinciguerra , Margot Vigeant , Ewan C. McNay

We introduce Mediffusion -- a new method for semi-supervised learning with explainable classification based on a joint diffusion model. The medical imaging domain faces unique challenges due to scarce data labelling -- insufficient for…

Computer Vision and Pattern Recognition · Computer Science 2024-11-15 Joanna Kaleta , Paweł Skierś , Jan Dubiński , Przemysław Korzeniowski , Kamil Deja

Fluorescence microscopy has enabled a dramatic development in modern biology by visualizing biological organisms with micrometer scale resolution. However, due to the diffraction limit, sub-micron/nanometer features are difficult to…

Image and Video Processing · Electrical Eng. & Systems 2021-03-10 Varun Mannam , Yide Zhang , Xiaotong Yuan , Scott Howard

Single-molecule localization microscopy generates point clouds corresponding to fluorophore localizations. Spatial cluster identification and analysis of these point clouds are crucial for extracting insights about molecular organization.…

Machine Learning · Computer Science 2025-12-12 Jesús Pineda , Sergi Masó-Orriols , Montse Masoliver , Joan Bertran , Mattias Goksör , Giovanni Volpe , Carlo Manzo

We introduce a new, highly sensitive, and simple heterodyne optical method for imaging individual nonfluorescent nanoclusters and nanocrystals. A 2 order of magnitude improvement of the signal is achieved compared to previous methods. This…

Optics · Physics 2007-05-23 Stéphane Berciaud , Laurent Cognet , Gerhard A Blab , Brahim Lounis

We propose a straightforward sample-based technique to calibrate the axial detection in 3D single molecule localization microscopy (SMLM). Using microspheres coated with fluorescent molecules, the calibration curves of PSF-shaping- or…

Recent advancements in text-to-image (T2I) generation have led to the emergence of highly expressive models such as diffusion transformers (DiTs), exemplified by FLUX. However, their massive parameter sizes lead to slow inference, high…

Graphics · Computer Science 2026-01-14 Fuhan Cai , Yong Guo , Jie Li , Wenbo Li , Jian Chen , Xiangzhong Fang

Single molecule fluorescence microscopy is a powerful technique for uncovering detailed information about biological systems, both in vitro and in vivo. In such experiments, the inherently low signal to noise ratios mean that accurate…

Computer Vision and Pattern Recognition · Computer Science 2013-06-10 Ji Won Yoon

Label-free cell classification is advantageous for supplying pristine cells for further use or examination, yet existing techniques frequently fall short in terms of specificity and speed. In this study, we address these limitations through…

Image and Video Processing · Electrical Eng. & Systems 2025-02-25 Khayrul Islam , Ratul Paul , Shen Wang , Yuwen Zhao , Partho Adhikary , Qiying Li , Xiaochen Qin , Yaling Liu

Visual feature clustering is one of the cost-effective approaches to segment objects in videos. However, the assumptions made for developing the existing algorithms prevent them from being used in situations like segmenting an unknown…

Computer Vision and Pattern Recognition · Computer Science 2018-03-02 A. M. R. R. Bandara , L. Ranathunga , N. A. Abdullah

Sub-visible particle analysis using flow imaging microscopy combined with deep learning has proven effective in identifying particle types, enabling the distinction of harmless components such as silicone oil from protein particles.…

Computer Vision and Pattern Recognition · Computer Science 2025-08-11 Utku Ozbulak , Michaela Cohrs , Hristo L. Svilenov , Joris Vankerschaver , Wesley De Neve

The movement of molecules inside living cells is a fundamental feature of biological processes. The ability to both observe and analyse the details of molecular diffusion in vivo at the single molecule and single cell level can add…

Quantitative Methods · Quantitative Biology 2012-11-21 Alex Robson , Kevin Burrage , Mark Leake

Many biological systems evolve through continuous local dynamics while switching between latent regimes defined by learning, stimulus context, internal state, or developmental stage. These processes are often observed only as unpaired…

Machine Learning · Computer Science 2026-05-12 Josue Ortega Caro , Yongxu Zhang , Hannah M Batchelor , Sizhuang He , Jessica Cardin , Shreya Saxena

Diffusion models excel in high-quality generation but suffer from slow inference due to iterative sampling. While recent methods have successfully transformed diffusion models into one-step generators, they neglect model size reduction,…

Computer Vision and Pattern Recognition · Computer Science 2024-07-19 Yuanzhi Zhu , Xingchao Liu , Qiang Liu

Fundus imaging is a critical tool in ophthalmology, with different imaging modalities offering unique advantages. For instance, fundus fluorescein angiography (FFA) can accurately identify eye diseases. However, traditional invasive FFA…

Computer Vision and Pattern Recognition · Computer Science 2025-03-11 Chengzhou Yu , Huihui Fang , Hongqiu Wang , Ting Deng , Qing Du , Yanwu Xu , Weihua Yang

The point spread function (PSF) serves as a fundamental descriptor linking the real-world scene to the captured signal, manifesting as camera blur. Accurate PSF estimation is crucial for both optical characterization and computational…

Computer Vision and Pattern Recognition · Computer Science 2026-01-13 Jiajian He , Enjie Hu , Shiqi Chen , Tianchen Qiu , Huajun Feng , Zhihai Xu , Yueting Chen

Intelligent analysis of medical imaging plays a crucial role in assisting clinical diagnosis. However, achieving efficient and high-accuracy image classification in resource-constrained computational environments remains challenging. This…

Computer Vision and Pattern Recognition · Computer Science 2025-08-18 Jingsong Xia , Yue Yin , Xiuhan Li

Four-dimensional scanning transmission electron microscopy (4D-STEM) enables mapping of diffraction information with nanometer-scale spatial resolution, offering detailed insight into local structure, orientation, and strain. However, as…

Compressive sensing can overcome the Nyquist criterion and record images with a fraction of the usual number of measurements required. However, conventional measurement bases are susceptible to diffraction and scattering, prevalent in…

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