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Representation learning and \emph{de novo} generation of proteins are pivotal computational biology tasks. Whilst natural language processing (NLP) techniques have proven highly effective for protein sequence modelling, structure modelling…

Quantitative Methods · Quantitative Biology 2025-01-08 Benoit Gaujac , Jérémie Donà , Liviu Copoiu , Timothy Atkinson , Thomas Pierrot , Thomas D. Barrett

This paper introduces a novel application of Video Joint-Embedding Predictive Architectures (V-JEPAs) for Facial Expression Recognition (FER). Departing from conventional pre-training methods for video understanding that rely on pixel-level…

Computer Vision and Pattern Recognition · Computer Science 2026-01-15 Lennart Eing , Cristina Luna-Jiménez , Silvan Mertes , Elisabeth André

Joint Embedding Predictive Architectures (JEPA) are a novel self supervised training technique that have shown recent promise across domains. We introduce BERT-JEPA (BEPA), a training paradigm that adds a JEPA training objective to…

Computation and Language · Computer Science 2026-01-05 Taj Gillin , Adam Lalani , Kenneth Zhang , Marcel Mateos Salles

We introduce the Generalized Energy Based Model (GEBM) for generative modelling. These models combine two trained components: a base distribution (generally an implicit model), which can learn the support of data with low intrinsic…

Machine Learning · Statistics 2021-12-22 Michael Arbel , Liang Zhou , Arthur Gretton

Image-based Joint-Embedding Predictive Architecture (I-JEPA) offers a promising approach to visual self-supervised learning through masked feature prediction. However with the inherent visual uncertainty at masked positions, feature…

Machine Learning · Computer Science 2026-05-06 Chen Huang , Xianhang Li , Vimal Thilak , Etai Littwin , Josh Susskind

Self-supervised learning has emerged as a powerful paradigm for learning visual representations without manual annotations, yet most methods still operate on a single modality and therefore miss the complementary structure available from…

Computer Vision and Pattern Recognition · Computer Science 2026-04-02 Ciem Cornelissen , Sam Leroux , Pieter Simoens

We present the Global Neural World Model (GNWM), a self-stabilizing framework that achieves topological quantization through balanced continuous entropy constraints. Operating as a continuous, action-conditioned Joint-Embedding Predictive…

Machine Learning · Computer Science 2026-04-21 Noureddine Kermiche

Recent advances in large language models (LLMs) have significantly enhanced question-answering (QA) capabilities, particularly in open-domain contexts. However, in closed-domain scenarios such as education, healthcare, and law, users demand…

Computation and Language · Computer Science 2025-07-29 Tuan Bui , Trong Le , Phat Thai , Sang Nguyen , Minh Hua , Ngan Pham , Thang Bui , Tho Quan

Recent advancements in specialized large-scale architectures for training image and language have profoundly impacted the field of computer vision and natural language processing (NLP). Language models, such as the recent ChatGPT and GPT4…

Biomolecules · Quantitative Biology 2023-05-04 Sergio Romero-Romero , Sebastian Lindner , Noelia Ferruz

Latent prediction--where agents learn by predicting their own latents--has emerged as a powerful paradigm for training general representations in machine learning. In reinforcement learning (RL), this approach has been explored to define…

Machine Learning · Computer Science 2025-10-02 Marco Bagatella , Matteo Pirotta , Ahmed Touati , Alessandro Lazaric , Andrea Tirinzoni

Image-to-point cross-modal learning has emerged to address the scarcity of large-scale 3D datasets in 3D representation learning. However, current methods that leverage 2D data often result in large, slow-to-train models, making them…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Avishka Perera , Kumal Hewagamage , Saeedha Nazar , Kavishka Abeywardana , Hasitha Gallella , Ranga Rodrigo , Mohamed Afham

In recent years, natural language processing (NLP) models have demonstrated remarkable capabilities in various domains beyond traditional text generation. In this work, we introduce PeptideGPT, a protein language model tailored to generate…

Machine Learning · Computer Science 2024-10-28 Aayush Shah , Chakradhar Guntuboina , Amir Barati Farimani

Current multimodal learning strategies primarily optimize in the original token space. Such a framework is easy to incorporate with the backbone of pretrained language model, but might result in modality collapse. To alleviate such issues,…

Machine Learning · Computer Science 2025-06-19 Hongyang Lei , Xiaolong Cheng , Qi Qin , Dan Wang , Kun Fan , Huazhen Huang , Qingqing Gu , Yetao Wu , Zhonglin Jiang , Yong Chen , Luo Ji

Recently, self-supervised representation learning relying on vast amounts of unlabeled data has been explored as a pre-training method for autonomous driving. However, directly applying popular contrastive or generative methods to this…

Robotics · Computer Science 2025-10-08 Haoran Zhu , Zhenyuan Dong , Kristi Topollai , Beiyao Sha , Anna Choromanska

In recent advancements in unsupervised visual representation learning, the Joint-Embedding Predictive Architecture (JEPA) has emerged as a significant method for extracting visual features from unlabeled imagery through an innovative…

Computer Vision and Pattern Recognition · Computer Science 2024-10-28 Shentong Mo , Shengbang Tong

Geospatial foundation models provide precomputed embeddings that serve as compact feature vectors for large-scale satellite remote sensing data. While these embeddings can reduce data-transfer bottlenecks and computational costs, Earth…

Computer Vision and Pattern Recognition · Computer Science 2026-03-10 Erik Scheurer , Rocco Sedona , Stefan Kesselheim , Gabriele Cavallaro

Multimodal approaches that integrate protein structure and sequence have achieved remarkable success in protein-protein interface prediction. However, extending these methods to protein-peptide interactions remains challenging due to the…

Signal Processing · Electrical Eng. & Systems 2025-11-03 Dian Chen , Yunkai Chen , Tong Lin , Sijie Chen , Xiaolin Cheng

Neural Architecture Representation Learning aims to transform network models into feature representations for predicting network attributes, playing a crucial role in deploying and designing networks for real-world applications. Recently,…

Machine Learning · Computer Science 2025-06-10 Haizhao Jing , Haokui Zhang , Zhenhao Shang , Rong Xiao , Peng Wang , Yanning Zhang

Learning efficient representations for decision-making policies is a challenge in imitation learning (IL). Current IL methods require expert demonstrations, which are expensive to collect. Additionally, they are not explicitly trained to…

Machine Learning · Computer Science 2026-03-19 Aleksandar Vujinovic , Aleksandar Kovacevic

Generative modeling has become a central paradigm in protein research, extending machine learning beyond structure prediction toward sequence design, backbone generation, inverse folding, and biomolecular interaction modeling. However, the…

Machine Learning · Computer Science 2026-03-30 Senura Hansaja Wanasekara , Minh-Duong Nguyen , Xiaochen Liu , Nguyen H. Tran , Ken-Tye Yong
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