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Modern language models operate on subword-tokenized text in order to make a trade-off between model size, inference speed, and vocabulary coverage. A side effect of this is that, during inference, models are evaluated by measuring the…

Computation and Language · Computer Science 2025-10-24 David Pohl , Marco Cognetta , Junyoung Lee , Naoaki Okazaki

Automated analysis of electroencephalography (EEG) has recently undergone a paradigm shift. The introduction of transformer architectures and self-supervised pretraining (SSL) has led to the development of EEG foundation models. These…

Neurons and Cognition · Quantitative Biology 2026-02-04 Hannah Portmann , Yosuke Morishima

DNA language models have advanced genomics, but their downstream performance varies widely due to differences in tokenization, pretraining data, and architecture. We argue that a major bottleneck lies in tokenizing sparse and unevenly…

Genomics · Quantitative Biology 2025-12-23 Xiaoxiao Zhou , Zihan Wang , Jingbo Shang , Yang E. Li

The current electroencephalogram (EEG) based deep learning models are typically designed for specific datasets and applications in brain-computer interaction (BCI), limiting the scale of the models and thus diminishing their perceptual…

Machine Learning · Computer Science 2024-06-06 Wei-Bang Jiang , Li-Ming Zhao , Bao-Liang Lu

Recently, large language models (LLMs) have outperformed human experts in predicting the results of neuroscience experiments (Luo et al., 2024). What is the basis for this performance? One possibility is that statistical patterns in that…

Neurons and Cognition · Quantitative Biology 2024-07-03 Xiaoliang Luo , Guangzhi Sun , Bradley C. Love

Large Language Models (LLMs) perform well on reasoning benchmarks but often fail when inputs alter slightly, raising concerns about the extent to which their success relies on memorization. This issue is especially acute in Chain-of-Thought…

Computation and Language · Computer Science 2025-08-22 Huihan Li , You Chen , Siyuan Wang , Yixin He , Ninareh Mehrabi , Rahul Gupta , Xiang Ren

Self-supervised learning (SSL) has recently received significant attention due to its ability to train high-performance encoders purely on unlabeled data-often scraped from the internet. This data can still be sensitive and empirical…

Machine Learning · Computer Science 2024-06-19 Wenhao Wang , Muhammad Ahmad Kaleem , Adam Dziedzic , Michael Backes , Nicolas Papernot , Franziska Boenisch

While Large Vision-Language Models (LVLMs) offer powerful capabilities, they pose privacy risks by unintentionally memorizing sensitive personal information. Current unlearning benchmarks attempt to mitigate this using fictitious identities…

Computer Vision and Pattern Recognition · Computer Science 2026-05-06 JuneHyoung Kwon , MiHyeon Kim , Eunju Lee , JungMin Yun , Byeonggeuk Lim , YoungBin Kim

Objectives: The vast and complex nature of human genomic sequencing data presents challenges for effective analysis. This review aims to investigate the application of Natural Language Processing (NLP) techniques, particularly Large…

Genomics · Quantitative Biology 2025-02-28 Shuyan Cheng , Yishu Wei , Yiliang Zhou , Zihan Xu , Drew N Wright , Jinze Liu , Yifan Peng

Large Language Models (LLMs), trained on massive corpora with billions of parameters, show unprecedented performance in various fields. Though surprised by their excellent performances, researchers also noticed some special behaviors of…

Computation and Language · Computer Science 2024-06-05 Bowen Chen , Namgi Han , Yusuke Miyao

Electroencephalography (EEG), with its broad range of applications, necessitates models that can generalize effectively across various tasks and datasets. Large EEG Models (LEMs) address this by pretraining encoder-centric architectures on…

Machine Learning · Computer Science 2025-09-29 Chenyu Liu , Yuqiu Deng , Tianyu Liu , Jinan Zhou , Xinliang Zhou , Ziyu Jia , Yi Ding

Training neural network language models over large vocabularies is still computationally very costly compared to count-based models such as Kneser-Ney. At the same time, neural language models are gaining popularity for many applications…

Computation and Language · Computer Science 2015-12-16 Welin Chen , David Grangier , Michael Auli

Advances in neuroscience and artificial intelligence have enabled preliminary decoding of brain activity. However, despite the progress, the interpretability of neural representations remains limited. A significant challenge arises from the…

Computer Vision and Pattern Recognition · Computer Science 2025-12-23 Hasib Aslam , Muhammad Talal Faiz , Muhammad Imran Malik

Purely character-based language models (LMs) have been lagging in quality on large scale datasets, and current state-of-the-art LMs rely on word tokenization. It has been assumed that injecting the prior knowledge of a tokenizer into the…

Computation and Language · Computer Science 2019-08-28 Dokook Choe , Rami Al-Rfou , Mandy Guo , Heeyoung Lee , Noah Constant

Large Language Models (LLMs) have demonstrated remarkable capabilities across a wide range of tasks, yet they also exhibit memorization of their training data. This phenomenon raises critical questions about model behavior, privacy risks,…

Machine Learning · Computer Science 2025-12-15 Alexander Xiong , Xuandong Zhao , Aneesh Pappu , Dawn Song

While recurrent neural networks have found success in a variety of natural language processing applications, they are general models of sequential data. We investigate how the properties of natural language data affect an LSTM's ability to…

Computation and Language · Computer Science 2019-04-09 Nelson F. Liu , Omer Levy , Roy Schwartz , Chenhao Tan , Noah A. Smith

Recent advancements in large language models (LLMs) have remarkably enhanced performances on a variety of tasks in multiple languages. However, tokenizers in LLMs trained primarily on English-centric corpora often overly fragment a text…

Computation and Language · Computer Science 2024-08-07 Jimin Hong , Gibbeum Lee , Jaewoong Cho

Neural language models (LMs) are typically trained using only lexical features, such as surface forms of words. In this paper, we argue this deprives the LM of crucial syntactic signals that can be detected at high confidence using existing…

Computation and Language · Computer Science 2018-03-13 Duncan Blythe , Alan Akbik , Roland Vollgraf

Learning token embeddings based on token co-occurrence statistics has proven effective for both pre-training and fine-tuning in natural language processing. However, recent studies have pointed out that the distribution of learned…

Computation and Language · Computer Science 2024-10-17 Ying Zhang , Dongyuan Li , Manabu Okumura

Transformers, the backbone of modern large language models (LLMs), face inherent architectural limitations that impede their reasoning capabilities. Unlike recurrent networks, Transformers lack recurrent connections, confining them to…

Computation and Language · Computer Science 2024-10-30 Xiang Zhang , Juntai Cao , Chenyu You
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