Related papers: The First Known Problem That Is FPT with Respect t…
Let $G$ be an undirected graph. We say that $G$ contains a ladder of length $k$ if the $2 \times (k+1)$ grid graph is an induced subgraph of $G$ that is only connected to the rest of $G$ via its four cornerpoints. We prove that if all the…
Answer Set Programming (ASP) is a paradigm for modeling and solving problems for knowledge representation and reasoning. There are plenty of results dedicated to studying the hardness of (fragments of) ASP. So far, these studies resulted in…
Treewidth and hypertree width have proven to be highly successful structural parameters in the context of the Constraint Satisfaction Problem (CSP). When either of these parameters is bounded by a constant, then CSP becomes solvable in…
Treewidth is a measure of how tree-like a graph is. It has many important algorithmic applications because many NP-hard problems on general graphs become tractable when restricted to graphs of bounded treewidth. Algorithms for problems on…
We investigate the computation of minimum-cost spanning trees satisfying prescribed vertex degree constraints: Given a graph $G$ and a constraint function $D$, we ask for a (minimum-cost) spanning tree $T$ such that for each vertex $v$, $T$…
Graph Neural Networks (GNNs) is an architecture for structural data, and has been adopted in a mass of tasks and achieved fabulous results, such as link prediction, node classification, graph classification and so on. Generally, for a…
Phylogenetic networks are a generalization of phylogenetic trees to leaf-labeled directed acyclic graphs that represent ancestral relationships between species whose past includes non-tree-like events such as hybridization and horizontal…
In Path Set Packing, the input is an undirected graph $G$, a collection $\calp$ of simple paths in $G$, and a positive integer $k$. The problem is to decide whether there exist $k$ edge-disjoint paths in $\calp$. We study the parameterized…
Parameterized complexity theory has enabled a refined classification of the difficulty of NP-hard optimization problems on graphs with respect to key structural properties, and so to a better understanding of their true difficulties. More…
Integration and analysis of multi-omics data provide valuable insights for improving cancer subtype classification. However, such data are inherently heterogeneous, high-dimensional, and exhibit complex intra- and inter-modality…
We revisit a graph width parameter that we dub bipartite treewidth (btw). Bipartite treewidth can be seen as a common generalization of treewidth and the odd cycle transversal number, and is closely related to odd-minors. Intuitively, a…
Network Phylogenetic Diversity (Network-PD) is a measure for the diversity of a set of species based on a rooted phylogenetic network (with branch lengths and inheritance probabilities on the reticulation edges) describing the evolution of…
Many recent works address the question of characterizing induced obstructions to bounded treewidth. In 2022, Lozin and Razgon completely answered this question for graph classes defined by finitely many forbidden induced subgraphs. Their…
Parameterised subgraph counting problems are the most thoroughly studied topic in the theory of parameterised counting, and there has been significant recent progress in this area. Many of the existing tractability results for parameterised…
Motivated by the landmark resolution of the 1-2-3 Conjecture, we initiate the study of the parameterized complexity of the Vertex-Coloring {0,1}-Edge-Weighting problem and its generalization, Vertex-Coloring Pre-edge-Weighting, under…
We investigate a structural generalisation of treewidth we call $\mathcal{A}$-blind-treewidth where $\mathcal{A}$ denotes an annotated graph class. This width parameter is defined by evaluating only the size of those bags $B$ of…
Orthology and paralogy relations are often inferred by methods based on gene similarity, which usually yield a graph depicting the relationships between gene pairs. Such relation graphs are known to frequently contain errors, as they cannot…
Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…
It is known for many algorithmic problems that if a tree decomposition of width $t$ is given in the input, then the problem can be solved with exponential dependence on $t$. A line of research by Lokshtanov, Marx, and Saurabh [SODA 2011]…
In this work, we introduce TreeWidzard, an engine for developing dynamic programming algorithms that decide graph-theoretic properties parameterized by treewidth and pathwidth. Besides providing a unified framework for algorithms deciding…