Related papers: The First Known Problem That Is FPT with Respect t…
We consider the Shortest Odd Path problem, where given an undirected graph $G$, a weight function on its edges, and two vertices $s$ and $t$ in $G$, the aim is to find an $(s,t)$-path with odd length and, among all such paths, of minimum…
We continue the study of $(\mathrm{tw},\omega)$-bounded graph classes, that is, hereditary graph classes in which the treewidth can only be large due to the presence of a large clique, with the goal of understanding the extent to which this…
A mixed dominating set is a collection of vertices and edges that dominates all vertices and edges of a graph. We study the complexity of exact and parameterized algorithms for \textsc{Mixed Dominating Set}, resolving some open questions.…
A weighted directed network (WDN) is a directed graph in which each edge is associated to a unique value called weight. These networks are very suitable for modeling real-world social networks in which there is an assessment of one vertex…
In the Weighted Treewidth-$\eta$ Deletion problem we are given a node-weighted graph $G$ and we look for a vertex subset $X$ of minimum weight such that the treewidth of $G-X$ is at most $\eta$. We show that Weighted Treewidth-$\eta$…
Phylogenetic Diversity(PD)is a well-regarded measure of the overall biodiversity of a set of present-day species(taxa)that indicates its ecological significance.In the Maximize Phylogenetic Diversity(Max-PD)problem one is asked to find a…
The Flow Decomposition problem, which asks for the smallest set of weighted paths that "covers" a flow on a DAG, has recently been used as an important computational step in transcript assembly. We prove the problem is in FPT when…
We present a method for reducing the treewidth of a graph while preserving all the minimal $s-t$ separators. This technique turns out to be very useful for establishing the fixed-parameter tractability of constrained separation and…
Graph Neural Networks (GNNs) have achieved remarkable success in various graph-based tasks (e.g., node classification or link prediction). Despite their triumphs, GNNs still face challenges such as long training and inference times,…
This paper investigates concurrency-constrained scheduling problems, where the objective is to construct a schedule for a set of jobs subject to concurrency restrictions. Formally, we are given a conflict graph $G$ defined over a set of $n$…
Complex systems can be effectively modeled via graphs that encode networked interactions, where relations between entities or nodes are often quantified by signed edge weights, e.g., promotion/inhibition in gene regulatory networks, or…
Phylogenetic Diversity (PD) is a prominent quantitative measure of the biodiversity of a collection of present-day species (taxa). This measure is based on the evolutionary distance among the species in the collection. Loosely speaking, if…
Phylogenetic networks are a generalization of phylogenetic trees that are used to represent non-tree-like evolutionary histories that arise in organisms such as plants and bacteria, or uncertainty in evolutionary histories. An…
We investigate a relaxation of the notion of treewidth-fragility, namely tree-independence-number-fragility. In particular, we obtain polynomial-time approximation schemes for independent packing problems on fractionally…
We consider the Shallow-Light Steiner Network problem from a fixed-parameter perspective. Given a graph $G$, a distance bound $L$, and $p$ pairs of vertices $(s_1,t_1),\cdots,(s_p,t_p)$, the objective is to find a minimum-cost subgraph $G'$…
The notion of treewidth, introduced by Robertson and Seymour in their seminal Graph Minors series, turned out to have tremendous impact on graph algorithmics. Many hard computational problems on graphs turn out to be efficiently solvable in…
We consider the convex hull $P_{\varphi}(G)$ of all satisfying assignments of a given MSO formula $\varphi$ on a given graph $G$. We show that there exists an extended formulation of the polytope $P_{\varphi}(G)$ that can be described by…
In the Mixed Chinese Postman Problem (MCPP), given a weighted mixed graph $G$ ($G$ may have both edges and arcs), our aim is to find a minimum weight closed walk traversing each edge and arc at least once. The MCPP parameterized by the…
In this paper, we consider the problem of counting and sampling structures in graphs. We define a class of "edge universal labeling problems"---which include proper $k$-colorings, independent sets, and downsets---and describe simple…
Spectral-based graph neural networks (SGNNs) have been attracting increasing attention in graph representation learning. However, existing SGNNs are limited in implementing graph filters with rigid transforms (e.g., graph Fourier or…