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Large Language Models (LLMs) have demonstrated exceptional proficiency in text understanding and embedding tasks. However, their potential in multimodal representation, particularly for item-to-item (I2I) recommendations, remains…

Information Retrieval · Computer Science 2025-01-22 Chao Zhang , Haoxin Zhang , Shiwei Wu , Di Wu , Tong Xu , Xiangyu Zhao , Yan Gao , Yao Hu , Enhong Chen

The capacity of Large Language Models (LLMs) to follow complex instructions and generate factually accurate text is critical for their real-world application. However, standard decoding methods often fail to robustly satisfy these…

Large language models (LLMs) with instruction fine-tuning demonstrate superior generative capabilities. However, these models are resource-intensive. To alleviate this issue, we explore distilling knowledge from instruction-tuned LLMs into…

Computation and Language · Computer Science 2024-01-30 Minghao Wu , Abdul Waheed , Chiyu Zhang , Muhammad Abdul-Mageed , Alham Fikri Aji

Large language models (LLMs) have emerged as powerful tools for medical information retrieval, yet their accuracy and depth remain limited in specialized domains such as Alzheimer's disease (AD), a growing global health challenge. To…

This paper embarks on an exploration into the Large Language Model (LLM) datasets, which play a crucial role in the remarkable advancements of LLMs. The datasets serve as the foundational infrastructure analogous to a root system that…

Computation and Language · Computer Science 2024-02-29 Yang Liu , Jiahuan Cao , Chongyu Liu , Kai Ding , Lianwen Jin

Sentiment analysis and emotion detection are important research topics in natural language processing (NLP) and benefit many downstream tasks. With the widespread application of LLMs, researchers have started exploring the application of…

Computation and Language · Computer Science 2024-08-27 Zhiwei Liu , Kailai Yang , Tianlin Zhang , Qianqian Xie , Sophia Ananiadou

Nanobodies -- single-domain antibody fragments derived from camelid heavy-chain-only antibodies -- exhibit unique advantages such as compact size, high stability, and strong binding affinity, making them valuable tools in therapeutics and…

Machine Learning · Computer Science 2025-07-29 Yiming Zhang , Koji Tsuda

Instruction-finetuning (IFT) has become crucial in aligning Large Language Models (LLMs) with diverse human needs and has shown great potential in medical applications. However, previous studies mainly fine-tune LLMs on biomedical datasets…

Computation and Language · Computer Science 2025-04-02 Xinlu Zhang , Chenxin Tian , Xianjun Yang , Lichang Chen , Zekun Li , Linda Ruth Petzold

Protein language models (pLMs) pre-trained on vast protein sequence databases excel at various downstream tasks but often lack the structural knowledge essential for some biological applications. To address this, we introduce a method to…

Large Language Models (LLMs) have achieved remarkable success in high-resource languages, yet progress in Tibetan remains severely constrained. While recent efforts have begun to address pre-training data scarcity for Tibetan, a more…

Computation and Language · Computer Science 2026-05-27 Cheng Huang , Fan Gao , Nyima Tashi , Yutong Liu , Yadi Liu , Wenbin Wei , Xiangxiang Wang , Yongbin Yu

General-purpose large language models (LLMs) that rely on in-context learning do not reliably deliver the scientific understanding and performance required for drug discovery tasks. Simply increasing model size or introducing reasoning…

With the growing prominence of antibody-based therapeutics, antibody engineering has gained increasing attention as a critical area of research and development. Recent progress in transformer-based protein large language models (LLMs) has…

Machine Learning · Computer Science 2025-06-17 Eunna Huh , Hyeonsu Lee , Hyunjin Shin

Protein is linked to almost every life process. Therefore, analyzing the biological structure and property of protein sequences is critical to the exploration of life, as well as disease detection and drug discovery. Traditional protein…

Machine Learning · Computer Science 2021-12-08 Yijia Xiao , Jiezhong Qiu , Ziang Li , Chang-Yu Hsieh , Jie Tang

This study demonstrates the application of instruction finetuning of pretrained Large Language Models (LLMs) to automate the generation of AI research leaderboards, extracting (Task, Dataset, Metric, Score) quadruples from articles. It aims…

Computation and Language · Computer Science 2024-08-20 Salomon Kabongo , Jennifer D'Souza

Despite the effectiveness of vision-language supervised fine-tuning in enhancing the performance of Vision Large Language Models (VLLMs). However, existing visual instruction tuning datasets include the following limitations: (1)…

Computer Vision and Pattern Recognition · Computer Science 2024-12-17 Yangzhou Liu , Yue Cao , Zhangwei Gao , Weiyun Wang , Zhe Chen , Wenhai Wang , Hao Tian , Lewei Lu , Xizhou Zhu , Tong Lu , Yu Qiao , Jifeng Dai

The goal of protein representation learning is to extract knowledge from protein databases that can be applied to various protein-related downstream tasks. Although protein sequence, structure, and function are the three key modalities for…

Biomolecules · Quantitative Biology 2024-05-14 Eunji Ko , Seul Lee , Minseon Kim , Dongki Kim

Instruction tuning has become an integral part of training pipelines for Large Language Models (LLMs) and has been shown to yield strong performance gains. In an orthogonal line of research, Annotation Error Detection (AED) has emerged as a…

Computation and Language · Computer Science 2024-02-23 Leon Weber-Genzel , Robert Litschko , Ekaterina Artemova , Barbara Plank

Large Language models (LLMs) have emerged as powerful tools for addressing challenges across diverse domains. Notably, recent studies have demonstrated that large language models significantly enhance the efficiency of biomolecular analysis…

Computation and Language · Computer Science 2025-03-07 Jiyue Jiang , Zikang Wang , Yuheng Shan , Heyan Chai , Jiayi Li , Zixian Ma , Xinrui Zhang , Yu Li

Current protein language models (PLMs) learn protein representations mainly based on their sequences, thereby well capturing co-evolutionary information, but they are unable to explicitly acquire protein functions, which is the end goal of…

Biomolecules · Quantitative Biology 2023-07-06 Minghao Xu , Xinyu Yuan , Santiago Miret , Jian Tang

Following the initial flourishing of large language models (LLMs), there has been a surge in proposed large vision-language models (LVLMs) that integrate LLMs with vision capabilities. However, it has been observed that LVLMs, after tuning…

Computation and Language · Computer Science 2025-12-30 Daiki Shiono , Shumpei Miyawaki , Ryota Tanaka , Jun Suzuki
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