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Contraction Clustering (RASTER) is a single-pass algorithm for density-based clustering of 2D data. It can process arbitrary amounts of data in linear time and in constant memory, quickly identifying approximate clusters. It also exhibits…

Data Structures and Algorithms · Computer Science 2020-09-17 Gregor Ulm , Simon Smith , Adrian Nilsson , Emil Gustavsson , Mats Jirstrand

We present a Compression Tool, "GenBit Compress", for genetic sequences based on our new proposed "GenBit Compress Algorithm". Our Tool achieves the best compression ratios for Entire Genome (DNA sequences) . Significantly better…

Mathematical Software · Computer Science 2010-07-15 P. Raja Rajeswari , Allam Apparo , V. K. Kumar

Despite the success of deep neural networks (DNNs), state-of-the-art models are too large to deploy on low-resource devices or common server configurations in which multiple models are held in memory. Model compression methods address this…

The rapid increase in the size of large language models (LLMs) has significantly escalated their computational and memory demands, posing challenges for efficient deployment, especially on resource-constrained devices. Structured pruning…

Machine Learning · Computer Science 2025-01-17 Hanyu Hu , Pengxiang Zhao , Ping Li , Yi Zheng , Zhefeng Wang , Xiaoming Yuan

Due to the vast testing space, the increasing demand for effective and efficient testing of deep neural networks (DNNs) has led to the development of various DNN test case prioritization techniques. However, the fact that DNNs can deliver…

Software Engineering · Computer Science 2024-09-17 Jialuo Chen , Jingyi Wang , Xiyue Zhang , Youcheng Sun , Marta Kwiatkowska , Jiming Chen , Peng Cheng

The rapid advancement of generative artificial intelligence has spurred innovative approaches to semantic communication, giving rise to a new paradigm known as generative semantic communication (GSC). The integration of flexible cross-modal…

Signal Processing · Electrical Eng. & Systems 2025-11-03 Yiru Wang , Wanting Yang , Fangli Mou , Zehui Xiong , Zide Fan , Shiwen Mao , Tony Q. S. Quek

A genome read data set can be quickly and efficiently remapped from one reference to another similar reference (e.g., between two reference versions or two similar species) using a variety of tools, e.g., the commonly-used CrossMap tool.…

Genomics · Quantitative Biology 2023-11-21 Jeremie S. Kim , Can Firtina , Meryem Banu Cavlak , Damla Senol Cali , Can Alkan , Onur Mutlu

Generative retrieval has emerged as a powerful paradigm for LLM-based recommendation. However, industrial recommender systems often benefit from restricting the output space to a constrained subset of items based on business logic (e.g.…

Auto-regressive Large Language Models (LLMs) demonstrate remarkable performance across different domains such as vision and language processing. However, due to sequential processing through a stack of transformer layers, autoregressive…

Computation and Language · Computer Science 2025-08-28 Akriti Jain , Saransh Sharma , Koyel Mukherjee , Soumyabrata Pal

Searching for novel molecular compounds with desired properties is an important problem in drug discovery. Many existing frameworks generate molecules one atom at a time. We instead propose a flexible editing paradigm that generates…

Biomolecules · Quantitative Biology 2021-11-02 Benson Chen , Xiang Fu , Regina Barzilay , Tommi Jaakkola

Computational micromechanics and homogenization require the solution of the mechanical equilibrium of a periodic cell that comprises a (generally complex) microstructure. Techniques that apply the Fast Fourier Transform have attracted much…

Numerical Analysis · Mathematics 2017-02-21 T. W. J. de Geus , J. Vondrejc , J. Zeman , R. H. J. Peerlings , M. G. D. Geers

In theory, vector quantization (VQ) is always better than scalar quantization (SQ) in terms of rate-distortion (R-D) performance. Recent state-of-the-art methods for neural image compression are mainly based on nonlinear transform coding…

Computer Vision and Pattern Recognition · Computer Science 2023-05-26 Runsen Feng , Zongyu Guo , Weiping Li , Zhibo Chen

Improving model robustness in case of corrupted images is among the key challenges to enable robust vision systems on smart devices, such as robotic agents. Particularly, robust test-time performance is imperative for most of the…

Computer Vision and Pattern Recognition · Computer Science 2025-10-13 Elena Camuffo , Umberto Michieli , Jijoong Moon , Daehyun Kim , Mete Ozay

Lossy image compression is essential for efficient transmission and storage. Traditional compression methods mainly rely on discrete cosine transform (DCT) or singular value decomposition (SVD), both of which represent image data in…

Image and Video Processing · Electrical Eng. & Systems 2025-03-28 Pooya Ashtari , Pourya Behmandpoor , Fateme Nateghi Haredasht , Jonathan H. Chen , Panagiotis Patrinos , Sabine Van Huffel

Existing deep convolutional neural networks (CNNs) generate massive interlayer feature data during network inference. To maintain real-time processing in embedded systems, large on-chip memory is required to buffer the interlayer feature…

Hardware Architecture · Computer Science 2021-10-13 Zhuang Shao , Xiaoliang Chen , Li Du , Lei Chen , Yuan Du , Wei Zhuang , Huadong Wei , Chenjia Xie , Zhongfeng Wang

Sample efficiency is a crucial problem in deep reinforcement learning. Recent algorithms, such as REDQ and DroQ, found a way to improve the sample efficiency by increasing the update-to-data (UTD) ratio to 20 gradient update steps on the…

Machine Learning · Computer Science 2024-03-26 Aditya Bhatt , Daniel Palenicek , Boris Belousov , Max Argus , Artemij Amiranashvili , Thomas Brox , Jan Peters

While image generation with diffusion models has achieved a great success, generating images of higher resolution than the training size remains a challenging task due to the high computational cost. Current methods typically perform the…

Computer Vision and Pattern Recognition · Computer Science 2025-02-28 Zhengqiang Zhang , Ruihuang Li , Lei Zhang

Deep learning accelerators efficiently train over vast and growing amounts of data, placing a newfound burden on commodity networks and storage devices. A common approach to conserve bandwidth involves resizing or compressing data prior to…

Machine Learning · Computer Science 2021-08-13 Michael Kuchnik , George Amvrosiadis , Virginia Smith

In this paper we address the problem of performing statistical inference for large scale data sets i.e., Big Data. The volume and dimensionality of the data may be so high that it cannot be processed or stored in a single computing node. We…

Methodology · Statistics 2016-04-20 Shahab Basiri , Esa Ollila , Visa Koivunen

Quantum state tomography (QST) is the process of reconstructing the complete state of a quantum system (mathematically described as a density matrix) through a series of different measurements. These measurements are performed on a number…

Quantum Physics · Physics 2025-01-08 Hailan Ma , Zhenhong Sun , Daoyi Dong , Dong Gong