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Bridging different modalities lies at the heart of cross-modality generation. While conventional approaches treat the text modality as a conditioning signal that gradually guides the denoising process from Gaussian noise to the target image…

Computer Vision and Pattern Recognition · Computer Science 2025-11-27 Ju He , Qihang Yu , Qihao Liu , Liang-Chieh Chen

Tokenization is the first - and often underappreciated - layer of computation in language models. While Chain-of-Thought (CoT) prompting enables transformer models to approximate recurrent computation by externalizing intermediate steps, we…

Computation and Language · Computer Science 2025-05-21 Xiang Zhang , Juntai Cao , Jiaqi Wei , Yiwei Xu , Chenyu You

Unified speech foundation models require a holistic tokenization space that is both learnable by language models and decodable into high-quality waveforms. Existing speech tokenizers, however, often fail to satisfy these requirements…

Sound · Computer Science 2026-05-29 Bohan Li , Shi Lian , Hankun Wang , Yiwei Guo , Yu Xi , Zhihan Li , Da Zheng , Colin Zhang , Kai Yu

A central challenge in developing Multimodal Large Language Models (MLLMs) is effectively integrating heterogeneous inputs into a cohesive reasoning engine. Current paradigms predominantly rely on modular architectures that introduce…

Genomics · Quantitative Biology 2026-05-12 Yanan Li , Christina Yi Jin , Yuan Jin , Manli Luo , Tie Xu , Shuai Jiao , Wei He , Qing Zhang

Tokenization is a critical preprocessing step in large language model pipelines, yet widely-used implementations remain CPU-bound and suboptimal for batch inference workflows on GPU. We present BlockBPE, a parallel GPU implementation of…

Computation and Language · Computer Science 2025-07-17 Amos You

Introduction: Epigenomic datasets from high-throughput sequencing experiments are commonly summarized as genomic intervals. As the volume of this data grows, so does interest in analyzing it through deep learning. However, the heterogeneity…

The application of language models (LMs) to molecular structure generation using line notations such as SMILES and SELFIES has been well-established in the field of cheminformatics. However, extending these models to generate 3D molecular…

Machine Learning · Computer Science 2024-12-03 Kaiyuan Gao , Yusong Wang , Haoxiang Guan , Zun Wang , Qizhi Pei , John E. Hopcroft , Kun He , Lijun Wu

This study introduces a novel knowledge enhanced tokenisation mechanism, K-Tokeniser, for clinical text processing. Technically, at initialisation stage, K-Tokeniser populates global representations of tokens based on semantic types of…

Computation and Language · Computer Science 2024-06-21 Abul Hasan , Jinge Wu , Quang Ngoc Nguyen , Salomé Andres , Imane Guellil , Huayu Zhang , Arlene Casey , Beatrice Alex , Bruce Guthrie , Honghan Wu

In this work, we propose aligning pretrained visual encoders to serve as tokenizers for latent diffusion models in image generation. Unlike training a variational autoencoder (VAE) from scratch, which primarily emphasizes low-level details,…

Computer Vision and Pattern Recognition · Computer Science 2026-02-24 Bowei Chen , Sai Bi , Hao Tan , He Zhang , Tianyuan Zhang , Zhengqi Li , Yuanjun Xiong , Jianming Zhang , Kai Zhang

Unified Multimodal Large Language Models (MLLMs) require a visual representation that simultaneously supports high-fidelity reconstruction, complex semantic extraction, and generative suitability. However, existing visual tokenizers…

Computer Vision and Pattern Recognition · Computer Science 2026-03-12 Shaobin Zhuang , Yuang Ai , Jiaming Han , Weijia Mao , Xiaohui Li , Fangyikang Wang , Xiao Wang , Yan Li , Shanchuan Lin , Kun Xu , Zhenheng Yang , Huaibo Huang , Xiangyu Yue , Hao Chen , Yali Wang

DNA language models are increasingly used to represent genomic sequence, yet their effectiveness depends critically on how raw nucleotides are converted into model inputs. Unlike natural language, DNA offers no canonical boundaries, making…

Genomics · Quantitative Biology 2026-05-21 Taewon Kim , Jihwan Shin , Hyomin Kim , Youngmok Jung , Jonghoon Lee , Won-Chul Lee , Sungsoo Ahn , Insu Han

Large Audio Language Models (LALMs) have emerged with strong performance across diverse audio understanding tasks and can be further enhanced by neural audio codecs. Transitioning from multi-layer residual vector quantizers to a…

Sound · Computer Science 2025-12-05 Jingyi Li , Zhiyuan Zhao , Zhisheng Zhang , Yunfei Liu , Lijian Lin , Ye Zhu , Jiahao Wu , Qiuqiang Kong , Yu Li

This paper introduces DashengTokenizer, a continuous audio tokenizer engineered for joint use in both understanding and generation tasks. Unlike conventional approaches, which train acoustic tokenizers and subsequently integrate frozen…

Existing state-of-the-art image tokenization methods leverage diverse semantic features from pre-trained vision models for additional supervision, to expand the distribution of latent representations and thereby improve the quality of image…

Computer Vision and Pattern Recognition · Computer Science 2025-12-11 Xuan Zhao , Zhongyu Zhang , Yuge Huang , Yuxi Mi , Guodong Mu , Shouhong Ding , Jun Wang , Rizen Guo , Shuigeng Zhou

Tokenizer is an essential component for large language models (LLMs), and a tokenizer with a high compression rate can improve the model's representation and processing efficiency. However, the tokenizer cannot ensure high compression rate…

Computation and Language · Computer Science 2024-10-08 Shuhao Gu , Mengdi Zhao , Bowen Zhang , Liangdong Wang , Jijie Li , Guang Liu

Tokenization is a fundamental component of language models for code. It involves breaking down the input into units that are later passed to the language model stack to learn high-dimensional representations used in various contexts, from…

Software Engineering · Computer Science 2025-07-22 Mootez Saad , Hao Li , Tushar Sharma , Ahmed E. Hassan

Tokens serve as the basic units of representation in DNA language models (DNALMs), yet their design remains underexplored. Unlike natural language, DNA lacks inherent token boundaries or predefined compositional rules, making tokenization a…

Machine Learning · Computer Science 2026-04-13 Nan Huang , Xiaoxiao Zhou , Junxia Cui , Mario Tapia-Pacheco , Tiffany Amariuta , Yang Li , Jingbo Shang

Significant interests have recently risen in leveraging sequence-based large language models (LLMs) for drug design. However, most current applications of LLMs in drug discovery lack the ability to comprehend three-dimensional (3D)…

Text and faces are among the most perceptually salient and practically important patterns in visual generation, yet they remain challenging for autoregressive generators built on discrete tokenization. A central bottleneck is the tokenizer:…

Computer Vision and Pattern Recognition · Computer Science 2026-05-15 Yang Yue , Fangyun Wei , Tianyu He , Jinjing Zhao , Zanlin Ni , Zeyu Liu , Jiayi Guo , Lei Shi , Yue Dong , Li Chen , Ji Li , Gao Huang , Dong Chen

Visual tokenization remains a core challenge in unifying visual understanding and generation within the autoregressive paradigm. Existing methods typically employ tokenizers in discrete latent spaces to align with the tokens from large…

Computer Vision and Pattern Recognition · Computer Science 2025-10-09 Ziyuan Huang , DanDan Zheng , Cheng Zou , Rui Liu , Xiaolong Wang , Kaixiang Ji , Weilong Chai , Jianxin Sun , Libin Wang , Yongjie Lv , Taozhi Huang , Jiajia Liu , Qingpei Guo , Ming Yang , Jingdong Chen , Jun Zhou