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The mathematical formalisms used to model biological systems induce both latent and ambiguous assumptions that can limit or distort their representational capabilities. Developing formalisms that can represent systems more precisely is…

Quantitative Methods · Quantitative Biology 2026-05-25 Léo Diaz , Sean T. Vittadello , Michael P. H. Stumpf

Human cognition excels at symbolic reasoning, deducing abstract rules from limited samples. This has been explained using symbolic and connectionist approaches, inspiring the development of a neuro-symbolic architecture that combines both…

Artificial Intelligence · Computer Science 2024-05-24 Mohamed Mejri , Chandramouli Amarnath , Abhijit Chatterjee

The language of graph theory, or network science, has proven to be an exceptional tool for addressing myriad problems in neuroscience. Yet, the use of networks is predicated on a critical simplifying assumption: that the quintessential unit…

Neurons and Cognition · Quantitative Biology 2016-01-14 Chad Giusti , Robert Ghrist , Danielle S. Bassett

Hypernetworks, or hypernets for short, are neural networks that generate weights for another neural network, known as the target network. They have emerged as a powerful deep learning technique that allows for greater flexibility,…

Machine Learning · Computer Science 2025-01-03 Vinod Kumar Chauhan , Jiandong Zhou , Ping Lu , Soheila Molaei , David A. Clifton

Conventional hypernetworks are typically engineered around a specific base-model parameterization, so changing the target architecture often entails redesigning the hypernetwork and retraining it from scratch. We introduce the…

Machine Learning · Computer Science 2026-04-03 Xuanfeng Zhou

Applying Large Language Models (LLMs) to heterogeneous enterprise systems is hindered by hallucinations and failures in multi-hop, n-ary reasoning. Existing paradigms (e.g., GraphRAG, NL2SQL) lack the semantic grounding and auditable…

Artificial Intelligence · Computer Science 2026-05-21 Ling Wang , Xin Liu , Songnan Liu , Jianan Wang , Cheng Cheng , Yihan Zhu , Enyu Li , Yu Xiao , Jiangyong Xie , Duogong Yan , Jiangyi Chen

Deep learning methods have demonstrated outstanding performances on classification and regression tasks on homogeneous data types (e.g., image, audio, and text data). However, tabular data still pose a challenge, with classic machine…

Machine Learning · Computer Science 2023-11-15 Antonio Briola , Yuanrong Wang , Silvia Bartolucci , Tomaso Aste

Representing and navigating hierarchy is a fundamental primitive of reasoning. Large language models have demonstrated proficiency in a wide variety of tasks requiring hierarchical reasoning, but there exists limited analysis on how the…

Computation and Language · Computer Science 2026-05-08 Cutter Dawes , Aryan Sharma , Angelos Ioannis Lagos , Shivam Raval

Heterogeneous information network (HIN) embedding aims to embed multiple types of nodes into a low-dimensional space. Although most existing HIN embedding methods consider heterogeneous relations in HINs, they usually employ one single…

Social and Information Networks · Computer Science 2019-05-21 Yuanfu Lu , Chuan Shi , Linmei Hu , Zhiyuan Liu

While machine learning can accurately model process systems, models for decision making should also be structurally simple and physically interpretable. In process control, for example, (nearly) linear models are favored than nonlinear…

Systems and Control · Electrical Eng. & Systems 2026-05-25 Wentao Tang

We propose a distributional theory of how hypernymy -- the ``is-a'' relation between general and specific concepts -- is encoded geometrically in language representations. Starting from the empirically verified assumption that words closer…

Computation and Language · Computer Science 2026-05-25 Andres Nava , Matthieu Wyart

Large language model-based web agents have shown strong potential in automating web interactions through advanced reasoning and instruction following. While retrieval-based memory derived from historical trajectories enables these agents to…

Artificial Intelligence · Computer Science 2026-03-10 Yunteng Tan , Zhi Gao , Xinxiao Wu

A new method for hierarchical clustering is presented. It combines treelets, a particular multiscale decomposition of data, with a projection on a reproducing kernel Hilbert space. The proposed approach, called kernel treelets (KT),…

Machine Learning · Statistics 2019-07-24 Hedi Xia , Hector D. Ceniceros

{\em Hypernetworks} are architectures that produce the weights of a task-specific {\em primary network}. A notable application of hypernetworks in the recent literature involves learning to output functional representations. In these…

Machine Learning · Computer Science 2021-02-24 Etai Littwin , Tomer Galanti , Lior Wolf , Greg Yang

A grand challenge in network science is apparently the missing of a structural theory of networks. The authors have showed that the existence of community structures is a universal phenomenon in real networks, and that neither randomness…

Social and Information Networks · Computer Science 2013-11-01 Angsheng Li , Jiankou Li , Yicheng Pan

Network theory provides a principled abstraction of the human brain: reducing a complex system into a simpler representation from which to investigate brain organisation. Recent advancement in the neuroimaging field are towards representing…

Neurons and Cognition · Quantitative Biology 2016-03-23 A. W. Chung , M. D. Schirmer , M. L. Krishna , G. Ball , P. Aljabar , A. D. Edwards , G. Montana

Document-level RE requires reading, inferring and aggregating over multiple sentences. From our point of view, it is necessary for document-level RE to take advantage of multi-granularity inference information: entity level, sentence level…

Computation and Language · Computer Science 2020-03-31 Hengzhu Tang , Yanan Cao , Zhenyu Zhang , Jiangxia Cao , Fang Fang , Shi Wang , Pengfei Yin

Kernel matrices are ubiquitous in computational mathematics, often arising from applications in machine learning and scientific computing. In two or three spatial or feature dimensions, such problems can be approximated efficiently by a…

Numerical Analysis · Mathematics 2025-11-07 Abraham Khan , Chao Chen , Vishwas Rao , Arvind K. Saibaba

Research in Artificial Intelligence (AI) has focused mostly on two extremes: either on small improvements in narrow AI domains, or on universal theoretical frameworks which are usually uncomputable, incompatible with theories of biological…

The Hierarchical Kernel Transformer (HKT) is a multi-scale attention mechanism that processes sequences at L resolution levels via trainable causal downsampling, combining level-specific score matrices through learned convex weights. The…

Machine Learning · Computer Science 2026-04-13 Giansalvo Cirrincione