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Complex networks can be used to analyze structures and systems in the embryo. Not only can we characterize growth and the emergence of form, but also differentiation. The process of differentiation from precursor cell populations to…

Quantitative Methods · Quantitative Biology 2023-11-30 Bradly Alicea

Understanding the origins of complexity is a fundamental challenge with implications for biological and technological systems. Network theory emerges as a powerful tool to model complex systems. Networks are an intuitive framework to…

Disordered Systems and Neural Networks · Physics 2024-10-22 Blai Vidiella , Salva Duran-Nebreda , Sergi Valverde

Using tools from topology and functional analysis, we provide a framework where artificial neural networks, and their architectures, can be formally described. We define the notion of machine in a general topological context and show how…

Machine Learning · Computer Science 2022-11-30 Pietro Vertechi , Mattia G. Bergomi

Recently, the deep learning community has given growing attention to neural architectures engineered to learn problems in relational domains. Convolutional Neural Networks employ parameter sharing over the image domain, tying the weights of…

Machine Learning · Computer Science 2019-02-26 Marcelo O. R. Prates , Pedro H. C. Avelar , Henrique Lemos , Marco Gori , Luis Lamb

We introduce a simple initial working system in which relations (such as part-whole) are directly represented via an architecture with operating and learning rules fundamentally distinct from standard artificial neural network methods.…

Machine Learning · Computer Science 2026-02-06 E Bowen , R Granger , A Rodriguez

Groups with complex set intersection relations are a natural way to model a wide array of data, from the formation of social groups to the complex protein interactions which form the basis of biological life. One approach to representing…

Machine Learning · Computer Science 2025-01-15 Sepideh Maleki , Josh Vekhter , Keshav Pingali

Graphs have been utilized as a powerful tool to model pairwise relationships between people or objects. Such structure is a special type of a broader concept referred to as hypergraph, in which each hyperedge may consist of an arbitrary…

Social and Information Networks · Computer Science 2020-06-15 Manh Tuan Do , Se-eun Yoon , Bryan Hooi , Kijung Shin

Hypergraphs naturally represent group interactions, which are omnipresent in many domains: collaborations of researchers, co-purchases of items, and joint interactions of proteins, to name a few. In this work, we propose tools for answering…

Social and Information Networks · Computer Science 2023-10-25 Geon Lee , Seokbum Yoon , Jihoon Ko , Hyunju Kim , Kijung Shin

The neural tangent kernel (NTK) has garnered significant attention as a theoretical framework for describing the behavior of large-scale neural networks. Kernel methods are theoretically well-understood and as a result enjoy algorithmic…

Machine Learning · Computer Science 2024-05-30 Jonathan Wenger , Felix Dangel , Agustinus Kristiadi

A defining feature of twenty first century engineering challenges is their inherent complexity, demanding the convergence of knowledge across diverse disciplines. Establishing consistent methodological foundations for engineering systems…

Systems and Control · Electrical Eng. & Systems 2025-06-02 Amro M. Farid , Amirreza Hosseini , John C. Little

Natural and man-made transport webs are frequently dominated by dense sets of nested cycles. The architecture of these networks, as defined by the topology and edge weights, determines how efficiently the networks perform their function.…

Quantitative Methods · Quantitative Biology 2016-07-27 Carl D. Modes , Marcelo O. Magnasco , Eleni Katifori

Motivation: Real-world data often contain measurements with both continuous and discrete values. Despite the availability of many libraries, data sets with mixed data types require intensive pre-processing steps, and it remains a challenge…

Machine Learning · Computer Science 2020-05-12 Erdogan Taskesen

The new concept of multilevel network is introduced in order to embody some topological properties of complex systems with structures in the mesoscale which are not completely captured by the classical models. This new model, which…

This paper develops a methodology for representing machine learning models as models of formal theories, grounded in the perspective that machine learning models are a form of database and that databases are models of theories in coherent…

Category Theory · Mathematics 2026-04-17 Matthew Pugh , Jo Grundy , Corina Cirstea , Nick Harris

Language models pretrained on large collections of tabular data have demonstrated their effectiveness in several downstream tasks. However, many of these models do not take into account the row/column permutation invariances, hierarchical…

Machine Learning · Computer Science 2023-10-30 Pei Chen , Soumajyoti Sarkar , Leonard Lausen , Balasubramaniam Srinivasan , Sheng Zha , Ruihong Huang , George Karypis

Resource allocation and scheduling are a common problem in various distributed systems. Although widely studied, the state-of-the-art solutions either do not scale or lack the expressive power to capture the most complex instances of the…

Data Structures and Algorithms · Computer Science 2025-06-03 Rajpreet Singh , Novak Boškov , Aditya Gudal , Manzoor A. Khan

Evaluating node importance is a critical aspect of analyzing complex systems, with broad applications in digital marketing, rumor suppression, and disease control. However, existing methods typically rely on conventional network structures…

Social and Information Networks · Computer Science 2025-07-29 Xiaonan Ni , Guangyuan Mei , Su-Su Zhang , Yang Chen , Xin Xu , Chuang Liu , Xiu-Xiu Zhan

Kernel spectral clustering corresponds to a weighted kernel principal component analysis problem in a constrained optimization framework. The primal formulation leads to an eigen-decomposition of a centered Laplacian matrix at the dual…

Social and Information Networks · Computer Science 2014-12-03 Raghvendra Mall , Rocco Langone , Johan A. K. Suykens

Much effort has been devoted to evaluate whether multi-task learning can be leveraged to learn rich representations that can be used in various Natural Language Processing (NLP) down-stream applications. However, there is still a lack of…

Computation and Language · Computer Science 2018-11-27 Victor Sanh , Thomas Wolf , Sebastian Ruder

Semantic networks provide a useful tool to understand how related concepts are retrieved from memory. However, most current network approaches use pairwise links to represent memory recall patterns. Pairwise connections neglect higher-order…

Computation and Language · Computer Science 2023-04-14 Salvatore Citraro , Simon De Deyne , Massimo Stella , Giulio Rossetti