English
Related papers

Related papers: Dual-Path Knowledge-Augmented Contrastive Alignmen…

200 papers

Positive and negative association prediction between gene and phenotype helps to illustrate the underlying mechanism of complex traits in organisms. The transcription and regulation activity of specific genes will be adjusted accordingly in…

Machine Learning · Computer Science 2025-03-25 Yiru Pan , Xingyu Ji , Jiaqi You , Lu Li , Zhenping Liu , Xianlong Zhang , Zeyu Zhang , Maojun Wang

Remote sensing spatiotemporal fusion (STF) addresses the fundamental trade-off between temporal and spatial resolution by combining high temporal-low spatial and high spatial-low temporal imagery. This paper presents the first comprehensive…

Computer Vision and Pattern Recognition · Computer Science 2025-07-14 Enzhe Sun , Yongchuan Cui , Peng Liu , Jining Yan

With the emergence of advanced spatial transcriptomic technologies, there has been a surge in research papers dedicated to analyzing spatial transcriptomics data, resulting in significant contributions to our understanding of biology. The…

Genomics · Quantitative Biology 2024-04-11 Sikta Das Adhikari , Jiaxin Yang , Jianrong Wang , Yuehua Cui

Skin cancer classification is a crucial task in medical image analysis, where precise differentiation between malignant and non-malignant lesions is essential for early diagnosis and treatment. In this study, we explore Sequential and…

Computer Vision and Pattern Recognition · Computer Science 2025-08-19 Shubhi Agarwal , Amulya Kumar Mahto

Spatial transcriptomics is an emerging field that enables the identification of functional regions based on the spatial distribution of gene expression. Integrating this functional information present in transcriptomic data with structural…

Computer Vision and Pattern Recognition · Computer Science 2025-11-13 Shanaka Liyanaarachchi , Chathurya Wijethunga , Shihab Aaqil Ahamed , Akthas Absar , Ranga Rodrigo

Spatial transcriptomics (ST) measures gene expression at fine-grained spatial resolution, offering insights into tissue molecular landscapes. Previous methods for spatial gene expression prediction typically crop spots of interest from…

Computer Vision and Pattern Recognition · Computer Science 2025-11-26 Ruikun Zhang , Yan Yang , Liyuan Pan

Recent advancements in spatial transcriptomics technologies allow researchers to simultaneously measure RNA expression levels for hundreds to thousands of genes while preserving spatial information within tissues, providing critical…

Methodology · Statistics 2025-07-31 Catherine Higgins , Jingyi Jessica Li , Michelle Carey

Tooth arrangement is an essential step in the digital orthodontic planning process. Existing learning-based methods use hidden teeth features to directly regress teeth motions, which couples target pose perception and motion regression. It…

Computer Vision and Pattern Recognition · Computer Science 2024-09-19 Zhihui He , Chengyuan Wang , Shidong Yang , Li Chen , Yanheng Zhou , Shuo Wang

Single-cell RNA-sequencing technologies may provide valuable insights to the understanding of the composition of different cell types and their functions within a tissue. Recent technologies such as spatial transcriptomics, enable the…

Applications · Statistics 2023-05-16 Arhit Chakrabarti , Yang Ni , Bani K. Mallick

Accurate pancreas segmentation is critical for early cancer diagnosis, where annotation scarcity necessitates Semi-Supervised Learning (SSL). However, due to significant inter-sample morphological variability, existing SSL methods face…

Computer Vision and Pattern Recognition · Computer Science 2026-05-27 Yuqi Liu , Yufei Chen , Wei Fu , Xiaodong Yue , Shuo Li

Detection transformers like DETR have recently shown promising performance on many object detection tasks, but the generalization ability of those methods is still quite challenging for cross-domain adaptation scenarios. To address the…

Computer Vision and Pattern Recognition · Computer Science 2022-06-02 Jinhong Deng , Xiaoyue Zhang , Wen Li , Lixin Duan

The collaborative classification of dual-frequency PolSAR images is a meaningful but also challenging research. The effect of regional consistency on classification information learning and the rational use of dual-frequency data are two…

Computer Vision and Pattern Recognition · Computer Science 2025-07-08 Xinyue Xin , Ming Li , Yan Wu , Xiang Li , Peng Zhang , Dazhi Xu

Spatial transcriptomics (ST) enables simultaneous mapping of tissue morphology and spatially resolved gene expression, offering unique opportunities to study tumor microenvironment heterogeneity. Here, we introduce a computational framework…

Quantitative Methods · Quantitative Biology 2026-04-27 Ling Liao , Changhuei Yang , Maxim Artyomov , Mark Watson , Adam Kepecs , Haowen Zhou , Alexey Sergushichev , Richard Cote

Generative Adversarial Networks (GANs) have the capability of synthesizing images, which have been successfully applied to medical image synthesis tasks. However, most of existing methods merely consider the global contextual information…

Computer Vision and Pattern Recognition · Computer Science 2019-08-14 Tianyang Zhang , Huazhu Fu , Yitian Zhao , Jun Cheng , Mengjie Guo , Zaiwang Gu , Bing Yang , Yuting Xiao , Shenghua Gao , Jiang Liu

At present, deep neural network methods have played a dominant role in face alignment field. However, they generally use predefined network structures to predict landmarks, which tends to learn general features and leads to mediocre…

Computer Vision and Pattern Recognition · Computer Science 2024-12-03 Jun Wan , He Liu , Yujia Wu , Zhihui Lai , Wenwen Min , Jun Liu

Spatial Transcriptomics (ST) provides spatially-resolved gene expression, offering crucial insights into tissue architecture and complex diseases. However, its prohibitive cost limits widespread adoption, leading to significant attention on…

Computer Vision and Pattern Recognition · Computer Science 2026-03-27 Taejin Jeong , Joohyeok Kim , Jinyeong Kim , Chanyoung Kim , Seong Jae Hwang

Elastography ultrasound (EUS) provides additional bio-mechanical in-formation about lesion for B-mode ultrasound (BUS) in the diagnosis of breast cancers. However, joint utilization of both BUS and EUS is not popular due to the lack of EUS…

Computer Vision and Pattern Recognition · Computer Science 2020-07-15 Han Xiangmin , Wang Jun , Zhou Weijun , Chang Cai , Ying Shihui , Shi Jun

Spatially resolved transcriptomics represents a significant advancement in single-cell analysis by offering both gene expression data and their corresponding physical locations. However, this high degree of spatial resolution entails a…

Genomics · Quantitative Biology 2024-03-19 Xiaoyu Li , Wenwen Min , Shunfang Wang , Changmiao Wang , Taosheng Xu

Due to the data imbalance and the diversity of defects, student-teacher networks (S-T) are favored in unsupervised anomaly detection, which explores the discrepancy in feature representation derived from the knowledge distillation process…

Computer Vision and Pattern Recognition · Computer Science 2024-02-02 Liyi Yao , Shaobing Gao

Convolutional neural networks (CNNs) have been applied to learn spatial features for high-resolution (HR) synthetic aperture radar (SAR) image classification. However, there has been little work on integrating the unique statistical…

Computer Vision and Pattern Recognition · Computer Science 2022-05-04 Wenkai Liang , Yan Wu , Ming Li , Peng Zhang , Yice Cao , Xin Hu