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Clinical notes are text documents that are created by clinicians for each patient encounter. They are typically accompanied by medical codes, which describe the diagnosis and treatment. Annotating these codes is labor intensive and error…

Computation and Language · Computer Science 2018-04-18 James Mullenbach , Sarah Wiegreffe , Jon Duke , Jimeng Sun , Jacob Eisenstein

Clinical notes are assigned ICD codes - sets of codes for diagnoses and procedures. In the recent years, predictive machine learning models have been built for automatic ICD coding. However, there is a lack of widely accepted benchmarks for…

Artificial Intelligence · Computer Science 2023-04-28 Thanh-Tung Nguyen , Viktor Schlegel , Abhinav Kashyap , Stefan Winkler , Shao-Syuan Huang , Jie-Jyun Liu , Chih-Jen Lin

Accurate healthcare prediction is essential for improving patient outcomes. Existing work primarily leverages advanced frameworks like attention or graph networks to capture the intricate collaborative (CO) signals in electronic health…

Machine Learning · Computer Science 2025-04-02 Chuang Zhao , Hui Tang , Jiheng Zhang , Xiaomeng Li

Output-length prediction is important for efficient LLM serving, as it directly affects batching, memory reservation, and scheduling. For prompt-only length prediction, most existing methods use a one-shot sampled length as the label,…

Machine Learning · Computer Science 2026-04-10 Jing Wang , Yu-Yang Qian , Ke Xue , Chao Qian , Peng Zhao , Zhi-Hua Zhou

Methods in long-tail learning focus on improving performance for data-poor (rare) classes; however, performance for such classes remains much lower than performance for more data-rich (frequent) classes. Analyzing the predictions of…

Computer Vision and Pattern Recognition · Computer Science 2023-07-27 Nadine Chang , Jayanth Koushik , Aarti Singh , Martial Hebert , Yu-Xiong Wang , Michael J. Tarr

Automatically associating ICD codes with electronic health data is a well-known NLP task in medical research. NLP has evolved significantly in recent years with the emergence of pre-trained language models based on Transformers…

Computation and Language · Computer Science 2023-04-07 Yakini Tchouka , Jean-François Couchot , David Laiymani , Philippe Selles , Azzedine Rahmani

In the context of the Electronic Health Record, automated diagnosis coding of patient notes is a useful task, but a challenging one due to the large number of codes and the length of patient notes. We investigate four models for assigning…

Computation and Language · Computer Science 2017-11-22 Tal Baumel , Jumana Nassour-Kassis , Raphael Cohen , Michael Elhadad , No`emie Elhadad

In the context of the long-tail scenario, models exhibit a strong demand for high-quality data. Data-centric approaches aim to enhance both the quantity and quality of data to improve model performance. Among these approaches, information…

Computer Vision and Pattern Recognition · Computer Science 2023-11-06 Yanbiao Ma , Licheng Jiao , Fang Liu , Shuyuan Yang , Xu Liu , Puhua Chen

Class imbalance problems frequently occur in real-world tasks, and conventional deep learning algorithms are well known for performance degradation on imbalanced training datasets. To mitigate this problem, many approaches have aimed to…

Computer Vision and Pattern Recognition · Computer Science 2023-02-14 Sumyeong Ahn , Jongwoo Ko , Se-Young Yun

While the ICD code assignment problem has been widely studied, most works have focused on post-discharge document classification. Models for early forecasting of this information could be used for identifying health risks, suggesting…

Machine Learning · Computer Science 2025-08-18 Cindy Shih-Ting Huang , Clarence Boon Liang Ng , Marek Rei

Selection bias is a major obstacle toward valid causal inference in epidemiology. Over the past decade, several graphical rules based on causal diagrams have been proposed as the sufficient identification conditions for addressing selection…

Methodology · Statistics 2025-12-18 Yichi Zhang , Haidong Lu

Method: We develop CNN-based methods for automatic ICD coding based on clinical text from intensive care unit (ICU) stays. We come up with the Shallow and Wide Attention convolutional Mechanism (SWAM), which allows our model to learn local…

Computation and Language · Computer Science 2021-01-28 Shu Yuan Hu , Fei Teng

Electronic health record (EHR) coding is the task of assigning ICD codes to each EHR. Most previous studies either only focus on the frequent ICD codes or treat rare and frequent ICD codes in the same way. These methods perform well on…

Artificial Intelligence · Computer Science 2021-06-30 Shanshan Wang , Pengjie Ren , Zhumin Chen , Zhaochun Ren , Huasheng Liang , Qiang Yan , Evangelos Kanoulas , Maarten de Rijke

Multi-modal data comprising imaging (MRI, fMRI, PET, etc.) and non-imaging (clinical test, demographics, etc.) data can be collected together and used for disease prediction. Such diverse data gives complementary information about the…

Machine Learning · Computer Science 2018-12-27 Anees Kazi , S. Arvind krishna , Shayan Shekarforoush , Karsten Kortuem , Shadi Albarqouni , Nassir Navab

The datasets used for Deep Neural Network training (e.g., ImageNet, MSCOCO, etc.) are often manually balanced across categories (classes) to facilitate learning of all the categories. This curation process is often expensive and requires…

Computer Vision and Pattern Recognition · Computer Science 2024-11-12 Harsh Rangwani

This study presents a multimodal machine learning model to predict ICD-10 diagnostic codes. We developed separate machine learning models that can handle data from different modalities, including unstructured text, semi-structured text and…

Recommending safe and effective medication combinations from electronic health records (EHRs) is a core clinical AI problem, yet it remains difficult because patient trajectories are long, noisy, and clinically heterogeneous. Existing…

Machine Learning · Computer Science 2026-05-21 Krati Saxena , Tomohiro Shibata

ICD Coding aims to assign a wide range of medical codes to a medical text document, which is a popular and challenging task in the healthcare domain. To alleviate the problems of long-tail distribution and the lack of annotations of…

Computation and Language · Computer Science 2025-05-27 Xu Zhang , Kun Zhang , Wenxin Ma , Rongsheng Wang , Chenxu Wu , Yingtai Li , S. Kevin Zhou

Current computer-aided ECG diagnostic systems struggle with the underdetection of rare but critical cardiac anomalies due to the imbalanced nature of ECG datasets. This study introduces a novel approach using self-supervised anomaly…

Computer Vision and Pattern Recognition · Computer Science 2024-09-02 Aofan Jiang , Chaoqin Huang , Qing Cao , Yuchen Xu , Zi Zeng , Kang Chen , Ya Zhang , Yanfeng Wang

Automated medical coding is a process of codifying clinical notes to appropriate diagnosis and procedure codes automatically from the standard taxonomies such as ICD (International Classification of Diseases) and CPT (Current Procedure…

Machine Learning · Computer Science 2022-07-15 Jeshuren Chelladurai , Sudarsun Santhiappan , Balaraman Ravindran
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