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What is the reason for complex dynamical patterns registered from real biological neuronal networks? Noise and dynamical reconfiguring of a network (functional/dynamic connectome) were proposed as possible answers. In this case study, we…

Neurons and Cognition · Quantitative Biology 2023-06-16 A. Vidybida , O. Shchur

The spontaneous emergence of collective flows is a generic property of active fluids and often leads to chaotic flow patterns characterised by swirls, jets, and topological disclinations in their orientation field. However, the ability to…

Soft Condensed Matter · Physics 2017-03-07 Tyler N. Shendruk , Amin Doostmohammadi , Kristian Thijssen , Julia M. Yeomans

This work aims to propose and design a class of networks of coupled linear and nonlinear oscillators, in which short bursts of exogenous excitation result in sustained endogenous network activity that returns to a quiescent state only after…

Dynamical Systems · Mathematics 2023-09-07 Yu Mao , Harry Dankowicz

We explore pattern formation in an active fluid system involving two chemical species that regulate active stress: a fast-diffusing species ($A$) and a slow-diffusing species ($I$). The growth of species $A$ is modelled using a nonlinear…

Pattern Formation and Solitons · Physics 2026-05-26 Joydeep Das , Abhishek Chaudhuri , Sudeshna Sinha

Recently, we proposed a self-propelled particle model with competing alignment interactions: nearby particles tend to align their velocities whereas they anti-align their direction of motion with particles which are further away [R.…

Soft Condensed Matter · Physics 2016-05-02 Robert Großmann , Pawel Romanczuk , Markus Bär , Lutz Schimansky-Geier

Neuromorphic networks can be described in terms of coarse-grained variables, where emergent sustained behaviours spontaneously arise if stochasticity is properly taken in account. For example it has been recently found that a directed…

Adaptation and Self-Organizing Systems · Physics 2020-01-23 Ilenia Apicella , Daniel Maria Busiello , Silvia Scarpetta , Samir Suweis

The acoustofluidic method holds great promise for manipulating microorganisms. When exposed to the steady vortex structures of acoustic streaming flow, these microorganisms exhibit intriguing dynamic behaviors, such as hydrodynamic trapping…

Fluid Dynamics · Physics 2025-04-25 Xuyang Sun , Wenchang Tan , Yi Man

Polymers with active segments constitute prospective future materials and are used as a model for some biological systems such as chromatin. The directions of the active forces are typically introduced with temporal or spatial correlations…

Soft Condensed Matter · Physics 2024-11-25 Adam H. T. P. Höfler , Iurii Chubak , Christos N. Likos , Jan Smrek

We describe the formation of deposition patterns that are observed in many different experiments where a three-phase contact line of a volatile nanoparticle suspension or polymer solution recedes. A dynamical model based on a long-wave…

Fluid Dynamics · Physics 2011-06-24 Lubor Frastia , Andrew J. Archer , Uwe Thiele

Biological systems can rely on collective formation of a metachronal wave in an ensemble of oscillators for locomotion and for fluid transport. We consider one-dimensional chains of phase oscillators with nearest neighbor interactions,…

Biological Physics · Physics 2023-03-15 A. C. Quillen

Self-propelled particles with hydrodynamic interactions (microswimmers) have previously been shown to produce long-range ordering phenomena. Many theoretical explanations for these collective phenomena are connected to instabilities in the…

Soft Condensed Matter · Physics 2017-05-03 Yuzhou Qian , Peter R. Kramer , Patrick T. Underhill

Triadic interactions are general mechanisms by which a node or neuron can regulate directly the link or synapse between other two neurons. The regulation takes place in a familiar way by either depressing or facilitating synaptic…

Neurons and Cognition · Quantitative Biology 2024-11-01 Ana P. Millán , Hanlin Sun , Joaquín J. Torres

We study the motion of radially driven fluid-immersed particles in a novel Hele-Shaw cell with open boundaries. The initially uniform suspension forms a striped pattern within a specific range of horizontal oscillation frequencies and for…

Soft Condensed Matter · Physics 2021-11-02 Mahdieh Mohammadi , Maniya Maleki , Adam Wysocki , M. Reza Shaebani

We study collective self-organization of weakly magnetic active suspensions in a uniform external field by analyzing a mesoscopic continuum model that we have recently developed. Our model is based on a Smoluchowski equation for a particle…

Soft Condensed Matter · Physics 2020-10-28 Fabian R. Koessel , Sara Jabbari-Farouji

We show and explain how a long bead-spring chain, immersed in a homogeneous, isotropic turbulent flow, preferentially samples vortical flow structures. We begin with an elastic, extensible chain which is stretched out by the flow, up to…

Fluid Dynamics · Physics 2020-06-26 Jason R. Picardo , Rahul Singh , Samriddhi Sankar Ray , Dario Vincenzi

Cooperative motion in biological microswimmers is crucial for their survival as it facilitates adhesion to surfaces, formation of hierarchical colonies, efficient motion, and enhanced access to nutrients. Synthetic microswimmers currently…

Soft Condensed Matter · Physics 2022-04-12 Stefania Ketzetzi , Melissa Rinaldin , Pim Dröge , Joost de Graaf , Daniela J. Kraft

We consider the localized nonlinear breathing modes that emerge in heterogeneous granular configurations of two materials with a periodicity of three and four beads. We examine as characteristic examples chains with 1 steel and 2 alumnium…

Pattern Formation and Solitons · Physics 2015-05-28 C. Hoogeboom , P. G. Kevrekidis

Dynamics of various biological filaments can be understood within the framework of active polymer models. Here we consider a bead-spring model for a flexible polymer chain in which the active interaction among the beads is introduced via an…

Soft Condensed Matter · Physics 2021-08-03 Subhajit Paul , Suman Majumder , Subir K Das , Wolfhard Janke

We examine the influence of density on the transition between chain and spiral structures in planar assemblies of active semiflexible filaments, utilizing detailed numerical simulations. We focus on how increased density, and higher…

Soft Condensed Matter · Physics 2024-08-26 Giulia Janzen , D. A. Matoz-Fernandez

The onset of polar flocking in active matter is discontinuous, akin to gas-liquid phase transitions, except that the steady state exhibits microphase separation into polar clusters. While these features have been observed in theoretical…

Soft Condensed Matter · Physics 2021-03-31 Lorenz Huber , Timo Krüger , Erwin Frey