Related papers: Recognizing Leaf Powers and Pairwise Compatibility…
Motivated by the problem of reconstructing evolutionary history, Nishimura et al. defined $k$-leaf powers as the class of graphs $G=(V,E)$ which has a $k$-leaf root $T$, i.e., $T$ is a tree such that the vertices of $G$ are exactly the…
Tree Containment is a fundamental problem in phylogenetics useful for verifying a proposed phylogenetic network, representing the evolutionary history of certain species. Tree Containment asks whether the given phylogenetic tree (for…
We study the complexity of graph problems on graphs defined on groups, especially power graphs. We observe that an isomorphism invariant problem, such as Hamiltonian Path, Partition into Cliques, Feedback Vertex Set, Subgraph Isomorphism,…
We demonstrate that graph-based models are fully capable of representing higher-order interactions, and have a long history of being used for precisely this purpose. This stands in contrast to a common claim in the recent literature on…
It is well-known that the Vertex Cover problem is in P on bipartite graphs, however; the computational complexity of the Partial Vertex Cover problem on bipartite graphs is open. In this paper, we first show that the Partial Vertex Cover…
The complexity of the graph isomorphism problem for trapezoid graphs has been open over a decade. This paper shows that the problem is GI-complete. More precisely, we show that the graph isomorphism problem is GI-complete for comparability…
Reconstruction of evolutionary relationships between species is an important topic in the field of computational biology. Pairwise compatibility graphs (PCGs) are used to model such relationships. A graph is a PCG if its edges can be…
Pedigree graphs, or family trees, are typically constructed by an expensive process of examining genealogical records to determine which pairs of individuals are parent and child. New methods to automate this process take as input genetic…
In the area of beyond-planar graphs, i.e. graphs that can be drawn with some local restrictions on the edge crossings, the recognition problem is prominent next to the density question for the different graph classes. For 1-planar graphs,…
The overlap graphs of subtrees of a tree are equivalent to subtree filament graphs, the overlap graphs of subtrees of a star are cocomparability graphs, and the overlap graphs of subtrees of a caterpillar are interval filament graphs. In…
Mining for trees in a graph is shown to be NP-complete.
A hallmark of graph neural networks is their ability to distinguish the isomorphism class of their inputs. This study derives hardness results for the classification variant of graph isomorphism in the message-passing model (MPNN). MPNN…
In this paper, we revisit the split decomposition of graphs and give new combinatorial and algorithmic results for the class of totally decomposable graphs, also known as the distance hereditary graphs, and for two non-trivial subclasses,…
Given a 3-uniform hypergraph H, its 2-intersection graph G has for vertex set the hyperedges of H and ee' is an edge of G whenever e and e' have exactly two common vertices in H. Di Marco et al. prove that deciding wether a graph G is the…
The literature on word-representable graphs is quite rich, and a number of variations of the original definition have been proposed over the years. We are initiating a systematic study of such variations based on formal languages. In our…
In graph realization problems one is given a degree sequence and the task is to decide whether there is a graph whose vertex degrees match to the given sequence. This realization problem is known to be polynomial-time solvable when the…
We develop a canonical pairing between trees and graphs, which passes to their quotients by Jacobi identities. This pairing is an effective and simple tool for understanding the Lie and Poisson operads, providing canonical duals. In the…
Phylogenetic networks generalise phylogenetic trees and allow for the accurate representation of the evolutionary history of a set of present-day species whose past includes reticulate events such as hybridisation and lateral gene transfer.…
This article investigates how graph matching can be applied to process plant design data in order to support the reuse of previous designs. A literature review of existing graph matching algorithms is performed, and a group of algorithms is…
Here we prove that counting maximum matchings in planar, bipartite graphs is #P-complete. This is somewhat surprising in the light that the number of perfect matchings in planar graphs can be computed in polynomial time. We also prove that…