Related papers: Recognizing Leaf Powers and Pairwise Compatibility…
In this paper, we give a very simple proof that Treewidth is NP-complete; this proof also shows NP-completeness on the class of co-bipartite graphs. We then improve the result by Bodlaender and Thilikos from 1997 that Treewidth is…
In phylogenetics, evolution is traditionally represented in a tree-like manner. However, phylogenetic networks can be more appropriate for representing evolutionary events such as hybridization, horizontal gene transfer, and others. In…
In a paired threshold graph, each vertex has a weight, and two vertices are adjacent if their weight sum is large enough and their weight difference is small enough. It generalizes threshold graphs and unit interval graphs, both very well…
We continue and extend previous work on the parameterized complexity analysis of the NP-hard Stable Roommates with Ties and Incomplete Lists problem, thereby strengthening earlier results both on the side of parameterized hardness as well…
We show that P2T - the problem of deciding whether the edge set of a simple graph can be partitioned into two trees or not - is NP-complete.
In a previous work, we gave a metric on the class of semibinary tree-sibling time consistent phylogenetic networks that is computable in polynomial time; in particular, the problem of deciding if two networks of this kind are isomorphic is…
This work addresses the intrinsic relationship between trees and networks (i.e. graphs). A complete (invertible) mapping is presented which allows trees to be mapped into weighted graphs and then backmapped into the original tree without…
The class ${\cal L}_k$ of $k$-leaf powers consists of graphs $G=(V,E)$ that have a $k$-leaf root, that is, a tree $T$ with leaf set $V$, where $xy \in E$, if and only if the $T$-distance between $x$ and $y$ is at most $k$. Structure and…
A graph is a $k$-leaf power of a tree $T$ if its vertices are leaves of $T$ and two vertices are adjacent in $T$ if and only if their distance in $T$ is at most $k$. Then $T$ is a $k$-leaf root of $G$. This notion was introduced by…
Deciding whether there is a single tree -a supertree- that summarizes the evolutionary information in a collection of unrooted trees is a fundamental problem in phylogenetics. We consider two versions of this question: agreement and…
A graph $G$ is called a pairwise compatibility graph (PCG) if there exists an edge-weighted tree $T$ and two non-negative real numbers $d_{min}$ and $d_{max}$ such that each leaf $l_u$ of $T$ corresponds to a vertex $u \in V$ and there is…
A matching complex of a simple graph $G$ is a simplicial complex with faces given by the matchings of $G$. The topology of matching complexes is mysterious; there are few graphs for which the homotopy type is known. Marietti and Testa…
A graph $G=(V,E)$ is a pairwise compatibility graph (PCG) if there exists an edge-weighted tree $T$ and two non-negative real numbers $d_{min}$ and $d_{max}$, $d_{min} \leq d_{max}$, such that each node $u \in V$ is uniquely associated to a…
Recently, so-called treebased phylogenetic networks have gained considerable interest in the literature, where a treebased network is a network that can be constructed from a phylogenetic tree, called the base tree, by adding additional…
We study the problem of recognizing graph powers and computing roots of graphs. We provide a polynomial time recognition algorithm for r-th powers of graphs of girth at least 2r+3, thus improving a bound conjectured by Farzad et al. (STACS…
In some applications of matching, the structural or hierarchical properties of the two graphs being aligned must be maintained. The hierarchical properties are induced by the direction of the edges in the two directed graphs. These…
In a confluence of combinatorics and geometry, simultaneous representations provide a way to realize combinatorial objects that share common structure. A standard case in the study of simultaneous representations is the sunflower case where…
Phylogenetic networks are a generalization of phylogenetic trees to leaf-labeled directed acyclic graphs that represent ancestral relationships between species whose past includes non-tree-like events such as hybridization and horizontal…
We consider the NP-hard Tree Containment problem that has important applications in phylogenetics. The problem asks if a given leaf-labeled network contains a subdivision of a given leaf-labeled tree. We develop a fast algorithm for the…
In Chapter 1 we fully characterise pairs of finite graphs which form a gap in the full homomorphism order. This leads to a simple proof of the existence of generalised duality pairs. We also discuss how such results can be carried to…