Related papers: Recognizing Leaf Powers and Pairwise Compatibility…
We consider classes of graphs, which we call thick graphs, that have the vertices of a corresponding thin graph replaced by cliques and the edges replaced by cobipartite graphs In particular, we consider the case of thick forests, which we…
Valiant introduced some 25 years ago an algebraic model of computation along with the complexity classes VP and VNP, which can be viewed as analogues of the classical classes P and NP. They are defined using non-uniform sequences of…
Compatibility of unrooted phylogenetic trees is a well studied problem in phylogenetics. It asks to determine whether for a set of k input trees there exists a larger tree (called a supertree) that contains the topologies of all k input…
Leaf powers and $k$-leaf powers have been studied for over 20 years, but there are still several aspects of this graph class that are poorly understood. One such aspect is the leaf rank of leaf powers, i.e. the smallest number $k$ such that…
Temporal graphs are a special class of graphs for which a temporal component is added to edges, that is, each edge possesses a set of times at which it is available and can be traversed. Many classical problems on graphs can be translated…
We investigate the parameterized complexity of the recognition problem for the proper $H$-graphs. The $H$-graphs are the intersection graphs of connected subgraphs of a subdivision of a multigraph $H$, and the properness means that the…
The boxicity of a graph G, denoted as box(G) is defined as the minimum integer t such that G is an intersection graph of axis-parallel t-dimensional boxes. A graph G is a k-leaf power if there exists a tree T such that the leaves of the…
As a fundamental problem in pattern recognition, graph matching has applications in a variety of fields, from computer vision to computational biology. In graph matching, patterns are modeled as graphs and pattern recognition amounts to…
We characterize the compatibility of a collection of unrooted phylogenetic trees as a question of determining whether a graph derived from these trees --- the display graph --- has a specific kind of triangulation, which we call legal. Our…
Perfect Matching-Cut is the problem of deciding whether a graph has a perfect matching that contains an edge-cut. We show that this problem is NP-complete for planar graphs with maximum degree four, for planar graphs with girth five, for…
The presented material is devoted to the equivalent conversion from the vertex graphs to the edge graphs. We suggest that the proved theorems solve the problem of the isomorphism of graphs, the problem of the graph's enumeration with the…
Multiple interval graphs are a well-known generalization of interval graphs introduced in the 1970s to deal with situations arising naturally in scheduling and allocation. A $d$-interval is the union of $d$ intervals on the real line, and a…
A graph $G$ is said to be a `set graph' if it admits an acyclic orientation that is also `extensional', in the sense that the out-neighborhoods of its vertices are pairwise distinct. Equivalently, a set graph is the underlying graph of the…
A graph $G$ is a $k$-leaf power if there exists a tree $T$ whose leaf set is $V(G)$, and such that $uv \in E(G)$ if and only if the distance between $u$ and $v$ in $T$ is at most $k$. The graph classes of $k$-leaf powers have several…
Some classical graph problems such as finding minimal spanning tree, shortest path or maximal flow can be done efficiently. We describe slight variations of such problems which are shown to be NP-complete. Our proofs use straightforward…
Planar graphs can be represented as intersection graphs of different types of geometric objects in the plane, e.g., circles (Koebe, 1936), line segments (Chalopin \& Gon{\c{c}}alves, 2009), \textsc{L}-shapes (Gon{\c{c}}alves et al, 2018).…
Phylogenetic trees and networks are leaf-labelled graphs that are used to describe evolutionary histories of species. The Tree Containment problem asks whether a given phylogenetic tree is embedded in a given phylogenetic network. Given a…
Many complex questions in biology, physics, and mathematics can be mapped to the graph isomorphism problem and the closely related graph automorphism problem. In particular, these problems appear in the context of network visualization,…
Threshold graphs are recursive deterministic network models that have been proposed for describing certain economic and social interactions. One drawback of this graph family is that it has limited generative attachment rules. To mitigate…
Tolerance graphs model interval relations in such a way that intervals can tolerate a certain degree of overlap without being in conflict. This subclass of perfect graphs has been extensively studied, due to both its interesting structure…