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DataViz3D is an innovative online software that transforms complex datasets into interactive 3D spatial models using holographic technology. This tool enables users to generate scatter plot within a 3D space, accurately mapped to the XYZ…
stCEG is an R package which allows a user to fully specify a Chain Event Graph (CEG) model from data and to produce interactive plots. It includes functions for the user to visualise spatial variables they wish to include in the model.…
We present PyCCE, an open-source Python library to simulate the dynamics of spin qubits in a spin bath, using the cluster-correlation expansion (CCE) method. PyCCE includes modules to generate realistic spin baths, employing coupling…
The condvis package is for interactive visualization of sections in data space, showing fitted models on the section, and observed data near the section. The primary goal is the interpretation of complex models, and showing how the observed…
Summary: Cell population plots are visualizations showing cell population distributions in biological samples with single-cell data, traditionally shown with stacked bar charts. Here, we address issues with this approach, particularly its…
IVISIT is a generic interactive visual simulation tool that is based on Python/Numpy and can be used for system simulation, parameter optimization, parameter management, and visualization of system dynamics as required, for example,for…
We describe a software package called VPLanet that simulates fundamental aspects of planetary system evolution over Gyr timescales, with a focus on investigating habitable worlds. In this initial release, eleven physics modules are included…
Motivation: Revealing structural variations across sequences of closely related individuals or species is crucial for understanding their diversification mechanisms and roles. Results: We developed PatchWorkPlot, a tool for visualization of…
PySLSQP is a seamless interface for using the SLSQP algorithm from Python. It wraps the original SLSQP Fortran code sourced from the SciPy repository and provides a host of new features to improve the research utility of the original…
We present a Python package for ground-state preparation based on the probabilistic imaginary-time evolution algorithm, with particular focus on its state-vector-based implementation. A standard shot-based simulation is also supported, and…
Local governments, as part of 'smart city' initiatives and to promote interoperability, are increasingly incorporating open-source software into their data management, analysis, and visualisation workflows. Python, with its concise and…
anesthetic is a Python package for processing nested sampling runs, and will be useful for any scientist or statistician who uses nested sampling software. anesthetic unifies many existing tools and techniques in an extensible framework…
The visual inspection of image and catalog data continues to be a valuable aspect of astronomical data analysis. As the scale of astronomical image and catalog data continues to grow, visualizing the data becomes increasingly difficult. In…
Accurate simulation of astronomical observations is a critical element for any modern analyses, be it to measure event rates, analyses population properties, validate or train pipelines, account for selection effects, or correct biases. We…
SkyPortal is an open-source software package designed to efficiently discover interesting transients, manage follow-up, perform characterization, and visualize the results. By enabling fast access to archival and catalog data,…
An easy way to define and visualize geometry for PHITS input files introduced. Suggested FitsGeo Python package helps to define surfaces as Python objects and manipulate them conveniently. VPython assists to view defined geometry…
Multiplexed imaging data are revolutionizing our understanding of the composition and organization of tissues and tumors. A critical aspect of such tissue profiling is quantifying the spatial relationship relationships among cells at…
The Herschel Interactive Processing Environment (HIPE) was developed by the European Space Agency (ESA) in collaboration with NASA and the Herschel Instrument Control Centres to provide the astronomical community a complete environment to…
scida is a Python package for reading and analyzing large scientific data sets with support for various cosmological and galaxy formation simulations out-of-the-box. Data access is provided through a hierarchical dictionary-like data…
Dynamic program analysis (also known as profiling) is well-known for its powerful capabilities of identifying performance inefficiencies in software packages. Although a large number of dynamic program analysis techniques are developed in…