Related papers: Evaluating protein binding interfaces with PUMBA

Molecular docking is a key computational tool utilized to predict the binding conformations of small molecules to protein targets, which is fundamental in the design of novel drugs. Despite recent advancements in geometric deep…

Protein-RNA interactions are of vital importance to a variety of cellular activities. Both experimental and computational techniques have been developed to study the interactions. Due to the limitation of the previous database, especially…

Deep learning methods, especially Convolutional Neural Networks (CNN) and Vision Transformer (ViT), are frequently employed to perform semantic segmentation of high-resolution remotely sensed images. However, CNNs are constrained by their…

Skin lesion segmentation is a critical challenge in computer vision, and it is essential to separate pathological features from healthy skin for diagnostics accurately. Traditional Convolutional Neural Networks (CNNs) are limited by narrow…

Convolutional neural networks (CNNs) and transformers are widely employed in constructing UNet architectures for medical image segmentation tasks. However, CNNs struggle to model long-range dependencies, while transformers suffer from…

As protein informatics advances rapidly, the demand for enhanced predictive accuracy, structural analysis, and functional understanding has intensified. Transformer models, as powerful deep learning architectures, have demonstrated…

Accurate Autism Spectrum Disorder (ASD) diagnosis is vital for early intervention. This study presents a hybrid deep learning framework combining Vision Transformers (ViT) and Vision Mamba to detect ASD using eye-tracking data. The model…

Technical Element Score (TES) and Program Component Score (PCS) evaluations in figure skating demand precise assessment of athletic actions and artistic interpretation, respectively. Existing methods face three major challenges. Firstly,…

State Space Models (SSMs) with selective scan (Mamba) have been adapted into efficient vision models. Mamba, unlike Vision Transformers, achieves linear complexity for token interactions through a recurrent hidden state process. This…

Proteins are the essential drivers of biological processes. At the molecular level, they are chains of amino acids that can be viewed through a linguistic lens where the twenty standard residues serve as an alphabet combining to form a…

Multispectral oriented object detection faces challenges due to both inter-modal and intra-modal discrepancies. Recent studies often rely on transformer-based models to address these issues and achieve cross-modal fusion detection. However,…

Recent learned image compression (LIC) leverages Mamba-style state-space models (SSMs) for global receptive fields with linear complexity. However, the standard Mamba adopts content-agnostic, predefined raster (or multi-directional) scans…

Real-time 2D keypoint detection plays an essential role in computer vision. Although CNN-based and Transformer-based methods have achieved breakthrough progress, they often fail to deliver superior performance and real-time speed. This…

Nuclei panoptic segmentation supports cancer diagnostics by integrating both semantic and instance segmentation of different cell types to analyze overall tissue structure and individual nuclei in histopathology images. Major challenges…

Background: To understand protein function, it is important to study protein- protein interaction networks. These networks can be represented in network diagrams called protein interaction maps that can lead to better understanding by…

In the field of multi-source remote sensing image classification, remarkable progress has been made by using Convolutional Neural Network (CNN) and Transformer. Recently, Mamba-based methods built upon the State Space Model (SSM) have shown…

Visual State Space Model (VMamba) has recently emerged as a promising architecture, exhibiting remarkable performance in various computer vision tasks. However, its robustness has not yet been thoroughly studied. In this paper, we delve…

Cracks pose safety risks to infrastructure and cannot be overlooked. The prevailing structures in existing crack segmentation networks predominantly consist of CNNs or Transformers. However, CNNs exhibit a deficiency in global modeling…

State space models (SSMs) have recently garnered significant attention in computer vision. However, due to the unique characteristics of image data, adapting SSMs from natural language processing to computer vision has not outperformed the…

Robot grasping, whether handling isolated objects, cluttered items, or stacked objects, plays a critical role in industrial and service applications. However, current visual grasp detection methods based on Convolutional Neural Networks…