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We derive the nonequilibrium conductance matrix for open stationary Chemical Reaction Networks (CRNs) described by a deterministic mass action kinetic equation. As an illustration, we determine the nonequilibrium conductance matrix of a CRN…

Statistical Mechanics · Physics 2025-06-27 Paul Raux , Christophe Goupil , Gatien Verley

To implement a linearizable shared memory in synchronous message-passing systems it is necessary to wait for a time linear to the uncertainty in the latency of the network for both read and write operations. Waiting only for one of them…

Distributed, Parallel, and Cluster Computing · Computer Science 2016-07-28 Matthieu Perrin , Matoula Petrolia , Achour Mostefaoui , Claude Jard

Network translation has recently been used to establish steady state properties of mass action systems by corresponding the given system to a generalized one which is either dynamically or steady state equivalent. In this work we further…

Dynamical Systems · Mathematics 2018-08-14 Elisa Tonello , Matthew D. Johnston

The development of quantum algorithms and protocols calls for adequate modelling and verification techniques, which requires abstracting and focusing on the basic features of quantum concurrent systems, like CCS and CSP have done for their…

Logic in Computer Science · Computer Science 2024-08-28 Lorenzo Ceragioli , Fabio Gadducci , Giuseppe Lomurno , Gabriele Tedeschi

Neural networks achieve outstanding accuracy in classification and regression tasks. However, understanding their behavior still remains an open challenge that requires questions to be addressed on the robustness, explainability and…

Machine Learning · Computer Science 2021-05-13 Anna-Kathrin Kopetzki , Stephan Günnemann

The Chemical Reaction Network (CRN) is a well-studied model that describes the interaction of molecules in well-mixed solutions. In 2014, Qian and Winfree [22] proposed the abstract surface chemical reaction network model (sCRN), which…

Computational Complexity · Computer Science 2024-06-14 Yi-Xuan Lee , Ho-Lin Chen

We study a notion of robustness of a Markov kernel that describes a system of several input random variables and one output random variable. Robustness requires that the behaviour of the system does not change if one or several of the input…

Probability · Mathematics 2014-06-18 Johannes Rauh , Nihat Ay

This paper addresses characterizations of Integral Input-to-State Stability (iISS) for hybrid systems with memory. Based on the Krasovskii approach, a novel Lyapunov characterization of iISS is established to extend the hybrid system theory…

Systems and Control · Electrical Eng. & Systems 2026-04-24 Wenbang Wang , Neng Li , Wei Ren

The dynamics of many macromolecular machines is characterized by chemically-mediated structural changes that achieve large scale functional deployment through local rearrangements of constitutive protein sub-units. Motivated by recent high…

Soft Condensed Matter · Physics 2024-07-16 Noah Toyonaga , L Mahadevan

Developing machine learning enabled smart manufacturing is promising for composite structures assembly process. To improve production quality and efficiency of the assembly process, accurate predictive analysis on dimensional deviations and…

Machine Learning · Statistics 2020-11-24 Cheolhei Lee , Jianguo Wu , Wenjia Wang , Xiaowei Yue

Under suitable assumptions, the dynamic behaviour of a chemical reaction network is governed by an autonomous set of polynomial ordinary differential equations over continuous variables representing the concentrations of the reactant…

Dynamical Systems · Mathematics 2014-07-15 Matthew D. Johnston , David Siegel

Cyber-physical production systems (CPPS) integrate physical and computational resources due to increasingly available sensors and processing power. This enables the usage of data, to create additional benefit, such as condition monitoring…

Computers and Society · Computer Science 2019-06-04 Andreas Bunte , Andreas Fischbach , Jan Strohschein , Thomas Bartz-Beielstein , Heide Faeskorn-Woyke , Oliver Niggemann

Due to its non-crystalline nature, the glassy state has remained one the most exciting scientific challenges. To study such materials, Molecular Dynamics (MD) simulations have been extensively used because they provide a direct view into…

Materials Science · Physics 2015-06-23 Mathieu Bauchy

A procedure is discussed for creating coherent superpositions of motional states of ion strings. The motional states are across the structural transition linear-zigzag, and their coherent superposition is achieved by means of spin-dependent…

Interconnected networks describe the dynamics of important systems in a wide range such as biological systems and electrical power grids. Some important features of these systems were successfully studied and understood through simplified…

Systems and Control · Computer Science 2016-03-18 Thanh Long Vu , Konstantin Turitsyn

Robustness of linear systems with constant coefficients is considered. There exist methods and tools for analyzing the stability of systems with random or deterministic uncertainties. At the same time, there are no approaches for the…

Optimization and Control · Mathematics 2020-12-08 Andrey Tremba

The discourse surrounding the structural organization of mutualistic interactions mostly revolves around modularity and nestedness. The former is known to enhance the stability of communities, while the latter is related to their…

Physics and Society · Physics 2024-07-10 Aniello Lampo , María J. Palazzi , Javier Borge-Holthoefer , Albert Solé-Ribalta

Though modern neural networks have achieved impressive performance in both vision and language tasks, we know little about the functions that they implement. One possibility is that neural networks implicitly break down complex tasks into…

Computation and Language · Computer Science 2023-11-08 Michael A. Lepori , Thomas Serre , Ellie Pavlick

It is shown that a compound elastic structure, which displays a dynamic instability, may be designed as the union (or 'fusion') of two structures which are stable when separately analyzed. The compound elastic structure has two degrees of…

Classical Physics · Physics 2023-01-16 Marco Rossi , Andrea Piccolroaz , Davide Bigoni

A longstanding question in cognitive science concerns the learning mechanisms underlying compositionality in human cognition. Humans can infer the structured relationships (e.g., grammatical rules) implicit in their sensory observations…

Machine Learning · Computer Science 2021-05-20 Jacob Russin , Roland Fernandez , Hamid Palangi , Eric Rosen , Nebojsa Jojic , Paul Smolensky , Jianfeng Gao