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Given that the physical properties of polymeric liquids extend on a wide range of lengthscales, it is computationally convenient to represent them by coarse-grained (CG) descriptions at various granularities to investigate local and global…

Soft Condensed Matter · Physics 2019-06-06 Mohammadhasan Dinpajooh , Marina G. Guenza

We establish that mass conserving single terminal-linkage networks of chemical reactions admit positive steady states regardless of network deficiency and the choice of reaction rate constants. This result holds for closed systems without…

Molecular Networks · Quantitative Biology 2015-03-19 Santiago Akle , Onkar Dalal , Ronan M. T. Fleming , Michael Saunders , Nicole Taheri , Yinyu Ye

Quantum computation for chemical problems will require the construction of guiding states with sufficient overlap with a target state. Since easily available and initializable mean-field states are characterized by an overlap that is…

Computational Physics · Physics 2024-09-16 Maximilian Mörchen , Guang Hao Low , Thomas Weymuth , Hongbin Liu , Matthias Troyer , Markus Reiher

The paper investigates consensus problem for continuous-time multi-agent systems with time-varying communication graphs subject to process noises. Borrowing the ideas from input-to-state stability (ISS) and integral input-to-state stability…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-03-19 Guodong Shi , Karl Henrik Johansson

There is a high degree of compartmentalization in the living cell where various compartments sustain different chemical reactions and transport reactants among themselves. It is exactly such situation that is investigated. The main…

Statistical Mechanics · Physics 2009-11-11 Zoran Konkoli

The rapid advancement of technology underscores the critical importance of robustness in complex network systems. This paper presents a framework for investigating the structural robustness of interconnected network models. This paper…

Physics and Society · Physics 2023-11-01 Dong Gaogao , Sun Nannan , Wang Fan

We present a systematic mathematical analysis of the qualitative steady-state response to rate perturbations in large classes of reaction networks. This includes multimolecular reactions and allows for catalysis, enzymatic reactions,…

Dynamical Systems · Mathematics 2017-11-22 Bernhard Brehm , Bernold Fiedler

Security and RAS are two non-functional requirements under focus for current systems developed for the computing continuum. Due to the increased number of interconnected computer systems across the continuum, security becomes especially…

Artificial and biological agents cannon learn given completely random and unstructured data. The structure of data is encoded in the metric relationships between data points. In the context of neural networks, neuronal activity within a…

Machine Learning · Computer Science 2022-11-03 Kosio Beshkov , Jonas Verhellen , Mikkel Elle Lepperød

We propose a unified framework that allows for the full mechanistic reconstruction of chemical reaction networks (CRNs) from concentration data. The framework utilizes an integral formulation of the differential equations governing the…

Numerical Analysis · Mathematics 2026-02-13 Abraham Reyes-Velazquez , Stefan Güttel , Igor Larrosa , Jonas Latz

This paper is concerned with programming adaptive linear neural networks (ALNNs) using chemical reaction networks (CRNs) equipped with mass-action kinetics. Through individually programming the forward propagation and the backpropagation of…

Dynamical Systems · Mathematics 2022-04-14 Yuzhen Fan , Xiaoyu Zhang , Chuanhou Gao

Structural equation modeling is widely used in IS research. However, inconsistent construct definitions impede the cumulative development of knowledge. In this work, we present an approach that aims at the integration of structural equation…

Computation and Language · Computer Science 2026-05-19 Maximilian Reinhardt , Jonas Scharfenberger , Burkhardt Funk

Cyber-physical systems (CPS) incorporate the complex and large-scale engineered systems behind critical infrastructure operations, such as water distribution networks, energy delivery systems, healthcare services, manufacturing systems, and…

Cryptography and Security · Computer Science 2021-09-29 Charalambos Konstantinou , George Stergiopoulos , Masood Parvania , Paulo Esteves-Verissimo

We initiate the study of rate-constant-independent computation of Boolean predicates and numerical functions in the continuous model of chemical reaction networks (CRNs), which model the amount of a chemical species as a nonnegative,…

Computational Complexity · Computer Science 2025-06-10 Kim Calabrese , David Doty , Mina Latifi

In this paper, we consider composite networks formed from the Kronecker product of smaller networks. We find the observability and controllability properties of the product network from those of its constituent smaller networks. The overall…

Systems and Control · Electrical Eng. & Systems 2019-12-10 Mohammadreza Doostmohammadian , Usman A. Khan

We show that quantum computation circuits with coherent states as the logical qubits can be constructed using very simple linear networks, conditional measurements and coherent superposition resource states.

Quantum Physics · Physics 2007-05-23 T. C. Ralph , W. J. Munro , G. J. Milburn

This paper extends the inverse substructuring (IS) approach to the state-space domain and presents a novel state-space substructuring (SSS) technique that embeds the dynamics of connecting elements (CEs) in the Lagrange Multiplier…

Numerical Analysis · Mathematics 2023-02-08 Rafael Da Silva Oliveira Dias , Milena Martarelli , Paolo Chiariotti

Some results are presented on how oscillation is inherited by chemical reaction networks (CRNs) when they are built in natural ways from smaller oscillatory networks. The main results describe four important ways in which a CRN can be…

Dynamical Systems · Mathematics 2017-11-07 Murad Banaji

Biochemical models that exhibit bistability are of interest to biologists and mathematicians alike. Chemical reaction network theory can provide sufficient conditions for the existence of bistability, and on the other hand can rule out the…

Dynamical Systems · Mathematics 2008-04-28 Anne Shiu

Information processing relying on biochemical interactions in the cellular environment is essential for biological organisms. The implementation of molecular computational systems holds significant interest and potential in the fields of…

Dynamical Systems · Mathematics 2023-12-01 Yuzhen Fan , Xiaoyu Zhang , Chuanhou Gao , Denis Dochain