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Entanglement generation lies at the heart of many quantum networking protocols as it enables distributed and modular quantum computing. For superconducting qubits, entanglement fidelity is typically limited by photon loss in the links that…

Quantum repeater networks play a crucial role in distributing entanglement. Various link architectures have been proposed to facilitate the creation of Bell pairs between distant nodes, with entangled photon sources emerging as a primary…

The exploration of the concept of nonlocality beyond standard Bell scenarios in quantum network architectures unveils fundamentally new forms of correlations that hold a strong potential for future applications of quantum communication…

Single-cell sequencing has a significant role to explore biological processes such as embryonic development, cancer evolution, and cell differentiation. These biological properties can be presented by a two-dimensional scatter plot.…

Genomics · Quantitative Biology 2021-10-19 Ziyi Liu , Minghui Liao , Fulin luo , Bo Du

We propose a general scheme to controllably distribute pairwise entanglement in a quantum network of qubits by exploiting environmental ancilla qubits interacting with the network nodes through tunable Hamiltonians. Our approach leverages…

Quantum Physics · Physics 2026-04-03 Mert Doğan , Öner Faruk Ödemiş , Elif Yunt , Özgür E. Müstecaplıoğlu

For the vast majority of genes in sequenced genomes, there is limited understanding of how they are regulated. Without such knowledge, it is not possible to perform a quantitative theory-experiment dialogue on how such genes give rise to…

Genomics · Quantitative Biology 2024-06-07 Rosalind Wenshan Pan , Tom Roeschinger , Kian Faizi , Hernan Garcia , Rob Phillips

Quantum machine learning (QML) has emerged as an important area for Quantum applications, although useful QML applications would require many qubits. Therefore our paper is aimed at exploring the successful application of the Quantum…

Quantum Physics · Physics 2020-12-15 Jae-Eun Park , Brian Quanz , Steve Wood , Heather Higgins , Ray Harishankar

Quantum entanglement represents an ideal resource to guarantee the security of random numbers employed in many scientific and cryptographic applications. However, entanglement-based certified random number generators are particularly…

Quantum Physics · Physics 2022-03-07 Nicolò Leone , Stefano Azzini , Sonia Mazzucchi , Valter Moretti , Lorenzo Pavesi

The emergence of quantum sensor networks has presented opportunities for enhancing complex sensing tasks, while simultaneously introducing significant challenges in designing and analyzing quantum sensing protocols due to the intricate…

Quantum Physics · Physics 2024-10-17 Pengcheng Liao , Bingzhi Zhang , Quntao Zhuang

Classification using variational quantum circuits is a promising frontier in quantum machine learning. Quantum supervised learning (QSL) applied to classical data using variational quantum circuits involves embedding the data into a quantum…

Quantum Physics · Physics 2026-03-16 Yujin Kim , Changjae Im , Taehyun Kim , Tak Hur , Daniel K. Park

Background: Single-cell RNA sequencing (scRNA-seq) is a powerful profiling technique at the single-cell resolution. Appropriate analysis of scRNA-seq data can characterize molecular heterogeneity and shed light into the underlying cellular…

Applications · Statistics 2019-08-05 Siamak Zamani Dadaneh , Paul de Figueiredo , Sing-Hoi Sze , Mingyuan Zhou , Xiaoning Qian

Rare events such as financial crashes, climate extremes, and biological anomalies are notoriously difficult to model due to their scarcity and heavy-tailed distributions. Classical deep generative models often struggle to capture these rare…

Machine Learning · Computer Science 2025-11-05 M. Z. Haider , M. U. Ghouri , Tayyaba Noreen , M. Salman

Recent advances in machine learning force fields (MLFFs) are revolutionizing molecular simulations by bridging the gap between quantum-mechanical (QM) accuracy and the computational efficiency of mechanistic potentials. However, the…

Graph Neural Networks (GNNs) excel at learning from graph-structured data but are limited to modeling pairwise interactions, insufficient for capturing higher-order relationships present in many real-world systems. Topological Deep Learning…

Neural and Evolutionary Computing · Computer Science 2025-01-13 Simone Piperno , Claudio Battiloro , Andrea Ceschini , Francesca Dominici , Paolo Di Lorenzo , Massimo Panella

Gene regulation is a dynamic process that connects genotype and phenotype. Given the difficulty of physically mapping mammalian gene circuitry, we require new computational methods to learn regulatory rules. Natural language is a valuable…

Quantitative Methods · Quantitative Biology 2022-10-27 William Connell , Umair Khan , Michael J. Keiser

Recurrent neural networks are the foundation of many sequence-to-sequence models in machine learning, such as machine translation and speech synthesis. In contrast, applied quantum computing is in its infancy. Nevertheless there already…

Machine Learning · Computer Science 2020-10-01 Johannes Bausch

Gene regulatory networks are powerful tools for modeling interactions among genes to regulate their expression for homeostasis and differentiation. Single-cell sequencing offers a unique opportunity to build these networks with…

Molecular Networks · Quantitative Biology 2026-01-06 Yasin Uzun

Quantum Machine Learning (QML) continues to evolve, unlocking new opportunities for diverse applications. In this study, we investigate and evaluate the applicability of QML models for binary classification of genome sequence data by…

Machine Learning · Computer Science 2025-01-15 Navneet Singh , Shiva Raj Pokhrel

Translating single-cell RNA sequencing (scRNA-seq) data into mechanistic biological hypotheses remains a critical bottleneck, as agentic AI systems lack direct access to transcriptomic representations while expression foundation models…

Genomics · Quantitative Biology 2026-03-18 Omar Coser

In this work, an analysis of the performance of different Variational Quantum Circuits is presented, investigating how it changes with respect to entanglement topology, adopted gates, and Quantum Machine Learning tasks to be performed. The…

Quantum Physics · Physics 2025-09-22 Marco Mordacci , Michele Amoretti
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