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The recent release of the third generation partnership project, Release 17, calls for sub-meter cellular positioning accuracy with reduced latency in calculation. To provide such high accuracy on a worldwide scale, leveraging the received…

Quantum Physics · Physics 2023-06-16 Yousef Zook , Ahmed Shokry , Moustafa Youssef

RNA-sequencing (RNA-seq) has become an exemplar technology in modern biology and clinical applications over the past decade. It has gained immense popularity in the recent years driven by continuous efforts of the bioinformatics community…

Motivation: The MinION device by Oxford Nanopore is the first portable sequencing device. MinION is able to produce very long reads (reads over 100~kBp were reported), however it suffers from high sequencing error rate. In this paper, we…

Genomics · Quantitative Biology 2017-06-29 Vladimír Boža , Broňa Brejová , Tomáš Vinař

Integrating biology with complementary metal-oxide-semiconductor (CMOS) sensors can enable highly parallel measurements with minimal parasitic effects, significantly enhancing sensitivity. However, realizing this potential often requires…

Color centers in diamonds have emerged as a leading solid-state platform for advancing quantum technologies, satisfying the DiVincenzo criteria and recently achieving a quantum advantage in secret key distribution. Recent theoretical works…

The emergence of heterogeneity and domain-specific architectures targeting deep learning inference show great potential for enabling the deployment of modern CNNs on resource-constrained embedded platforms. A significant development is the…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-07-25 Dmitri Lyalikov

The newly developed deep-sequencing technologies make it possible to acquire both quantitative and qualitative information regarding transcript biology. By measuring messenger RNA levels for all genes in a sample, RNA-seq provides an…

Genomics · Quantitative Biology 2014-12-05 Lerong Li , Momiao Xiong

This paper presents a novel optical processing approach for exploring genome sequences built upon optical correlator for global alignment and extended DV-curve method for local alignment. To overcome the problem of traditional DV-curve…

Quantitative Methods · Quantitative Biology 2018-01-03 Ehsan Maleki , Hossein Babashah , Somayyeh Koohi , Zahra Kavehvash

High-speed signal processing is essential for maximizing data throughput in emerging communication applications, like multiple-input multiple-output (MIMO) systems and radio-frequency (RF) interference cancellation. However, as these…

Controlled atomic scale fabrication of functional devices is one of the holy grails of nanotechnology. The most promising class of techniques that enable deterministic nanodevice fabrication are based on scanning probe patterning or surface…

Recent progress on salient object detection mainly aims at exploiting how to effectively integrate multi-scale convolutional features in convolutional neural networks (CNNs). Many popular methods impose deep supervision to perform…

Computer Vision and Pattern Recognition · Computer Science 2021-01-21 Yun Liu , Ming-Ming Cheng , Xinyu Zhang , Guang-Yu Nie , Meng Wang

Because of DNA appealing features as perfect material, including minuscule size, defined structural repeat and rigidity, programmable DNA-mediated processing is a promising computing paradigm, which employs DNAs as information storing and…

Biological Physics · Physics 2015-08-17 Jian-Jun Shu , Qi-Wen Wang , Kian-Yan Yong , Fangwei Shao , Kee Jin Lee

Next-generation sequencing (NGS) technologies have enabled affordable sequencing of billions of short DNA fragments at high throughput, paving the way for population-scale genomics. Genomics data analytics at this scale requires overcoming…

Databases · Computer Science 2019-10-11 Darryl Ho , Jialin Ding , Sanchit Misra , Nesime Tatbul , Vikram Nathan , Vasimuddin Md , Tim Kraska

In the extreme environments of high-luminosity colliders, traditional planar silicon sensors suffer severe radiation-induced performance degradation and fail to satisfy the stringent demands of high-precision tracking and high-speed timing…

Instrumentation and Detectors · Physics 2026-05-11 Huimin Ji , Manwen Liu , Kuo Ma , Chuan Liao , Yanwen Liu , Zheng Li , Zhihua Li , Jun Luo

The Scaling of microchip technologies, from micron to submicron and now to deep sub-micron (DSM) range, has enabled large scale systems-on-chip (SoC). In future deep submicron (DSM) designs, the interconnect effect will definitely dominate…

Hardware Architecture · Computer Science 2012-03-20 Ahmed H. M. Soliman , E. M. Saad , M. El-Bably , Hesham M. A. M. Keshk

Multiple Sequences Alignment (MSA) of biological sequences is a fundamental problem in computational biology due to its critical significance in wide ranging applications including haplotype reconstruction, sequence homology, phylogenetic…

Distributed, Parallel, and Cluster Computing · Computer Science 2009-05-13 Fahad Saeed , Ashfaq Khokhar

Smart manufacturing requires on-device intelligence that meets strict latency and energy budgets. HyperDimensional Computing (HDC) offers a lightweight alternative by encoding data as high-dimensional hypervectors and computing with simple…

Machine Learning · Computer Science 2025-10-01 Fardin Jalil Piran , Anandkumar Patel , Rajiv Malhotra , Farhad Imani

Energy-efficient medical data classification is essential for modern disease screening, particularly in home and field healthcare where embedded devices are prevalent. While deep learning models achieve state-of-the-art accuracy, their…

Machine Learning · Computer Science 2026-03-24 Jianglan Wei , Zhenyu Zhang , Pengcheng Wang , Mingjie Zeng , Zhigang Zeng

High-throughput solid-state nanopore experiments generate continuous MHz-rate data streams in which only a small fraction of data contains informative molecular information. This creates storage and processing bottlenecks that limit…

The need to train DNN models on end-user devices (e.g., smartphones) is increasing with the need to improve data privacy and reduce communication overheads. Unlike datacenter servers with powerful CPUs and GPUs, modern smartphones consist…

Machine Learning · Computer Science 2022-06-13 Sanjay Sri Vallabh Singapuram , Fan Lai , Chuheng Hu , Mosharaf Chowdhury