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DNA sequencing is the process of determining the exact order of the nucleotide bases of an individual's genome in order to catalogue sequence variation and understand its biological implications. Whole-genome sequencing techniques produce…

Data Structures and Algorithms · Computer Science 2015-09-18 Ljiljana Brankovic , Costas S. Iliopoulos , Ritu Kundu , Manal Mohamed , Solon P. Pissis , Fatima Vayani

As the number of deep neural networks (DNNs) to be executed on a mobile system-on-chip (SoC) increases, the mobile SoC suffers from the real-time DNN acceleration within its limited hardware resources and power budget. Although the previous…

Hardware Architecture · Computer Science 2022-03-16 Dongseok Im , Gwangtae Park , Zhiyong Li , Junha Ryu , Hoi-Jun Yoo

High read depth can be used to assemble short sequence repeats. The existing genome assemblers fail in repetitive regions of longer than average read. I propose a new algorithm for a DNA assembly which uses the relative frequency of reads…

Genomics · Quantitative Biology 2015-01-08 Robert M. Nowak

Nanoelectromechanical resonators have been successfully used for a variety of sensing applications. Their extreme resolution comes from their small size at the cost of low capture area, making the "needle in a haystack" issue acute. This…

The growing popularity of Spiking Neural Networks (SNNs) and their applications has led to a significant fast-paced increase of neuromorphic architectures capable of mimicking the spike-based data processing typical of biological neurons.…

Hardware Architecture · Computer Science 2026-05-13 Michelangelo Barocci , Vittorio Fra , Enrico Macii , Gianvito Urgese

The rapid growth in computing demands, particularly driven by artificial intelligence applications, has begun to exceed the capabilities of traditional electronic hardware. Optical computing offers a promising alternative due to its…

Hardware Architecture · Computer Science 2025-07-24 Shupeng Ning , Hanqing Zhu , Chenghao Feng , Jiaqi Gu , David Z. Pan , Ray T. Chen

One of the biggest concerns in IoT is privacy and security. Encryption and authentication need big power budgets, which battery-operated IoT end-nodes do not have. Hardware accelerators designed for specific cryptographic operations provide…

Hardware Architecture · Computer Science 2020-10-01 Ömer Faruk Irmak , Arda Yurdakul

The main contribution of this paper is an approach for introducing additional context into state-of-the-art general object detection. To achieve this we first combine a state-of-the-art classifier (Residual-101[14]) with a fast detection…

Computer Vision and Pattern Recognition · Computer Science 2017-01-25 Cheng-Yang Fu , Wei Liu , Ananth Ranga , Ambrish Tyagi , Alexander C. Berg

DNA is not only the genetic material of life, but also a favorable material for a new computing model. Various research works based on DNA computing have been carried out in recent years. DNA sequence design is the foundation of such…

Emerging Technologies · Computer Science 2023-11-10 Yao Yao , Xun Zhang , Xin Liu , Yuan Liu , Xiaokang Zhang , Qiang Zhang

DNA sequence analysis is fundamental to life science research. The rapid development of next generation sequencing (NGS) technologies, and the richness and diversity of applications it makes feasible, have created an enormous gulf between…

Computational Engineering, Finance, and Science · Computer Science 2013-10-29 Shel Swenson , Yogesh Simmhan , Viktor Prasanna , Manish Parashar , Jason Riedy , David Bader , Richard Vuduc

DNA cloning methods are fundamental tools in molecular biology, synthetic biology, and genetic engineering that enable precise DNA manipulation for various scientific and biotechnological applications. This review systematically summarizes…

Biomolecules · Quantitative Biology 2025-05-07 Isabella Frighetto Bomfiglio , Isabelli Seiler de Medeiros Mendes , Diego Bonatto

In the current era, DeoxyriboNucleic Acid (DNA) based data storage emerges as an intriguing approach, garnering substantial academic interest and investigation. This paper introduces a novel deep joint source-channel coding (DJSCC) scheme…

Emerging Technologies · Computer Science 2023-11-03 Wenfeng Wu , Luping Xiang , Qiang Liu , Kun Yang

The Belle II experiment at the SuperKEKB collider is preparing for an upgrade after 2027-2028 to handle higher luminosity and increased background rates. A Radio Frequency System-on-Chip (RFSoC) has been identified as a potential candidate…

Instrumentation and Detectors · Physics 2024-12-02 L. Ruckman , A. Dragone , R. Herbst

We propose a new signaling scheme for on-chip optical-electrical-optical artificial neural networks that utilizes orthogonal delay-division multiplexing and pilot-tone based self-homodyne detection. This scheme offers a more efficient…

Emerging Technologies · Computer Science 2023-10-20 Andrea Zazzi , Arka Dipta Das , Lukas Hüssen , Renato Negra , Jeremy Witzens

Emerging applications in the IoT domain require ultra-low-power and high-performance end-nodes to deal with complex near-sensor-data analytics. Domains such as audio, radar, and Structural Health Monitoring require many computations to be…

Hardware Architecture · Computer Science 2023-05-15 Mattia Sinigaglia , Luca Bertaccini , Luca Valente , Angelo Garofalo , Simone Benatti , Luca Benini , Francesco Conti , Davide Rossi

Digital information can be encoded in the building-block sequence of macro-molecules, such as RNA and single-stranded DNA. Methods of "writing" and "reading" macromolecular strands are currently available, but they are slow and expensive.…

Emerging Technologies · Computer Science 2017-09-14 Masud Mansuripur , Pramod Khulbe

Abstract: Bionic learning with fused sensing, memory and processing functions outperforms artificial neural networks running on silicon chips in terms of efficiency and footprint. However, digital hardware implementation of bionic learning…

Emerging Technologies · Computer Science 2022-02-22 Shijie Wang , Xi Chen , Chao Zhao , Yuxin Kong , Baojun Lin , Yongyi Wu , Zhaozhao Bi , Ziyi Xuan , Tao Li , Yuxiang Li , Wei Zhang , En Ma , Zhongrui Wang , Wei Ma

This paper presents a configurable Convolutional Neural Network Accelerator (CNNA) for a System on Chip design (SoC). The goal was to accelerate inference of different deep learning networks on an embedded SoC platform. The presented CNNA…

Computer Vision and Pattern Recognition · Computer Science 2020-10-08 Kim Bjerge , Jonathan Horsted Schougaard , Daniel Ejnar Larsen

This paper presents a novel System-on-Chip (SoC) architecture for accelerating complex deep learning models for edge computing applications through a combination of hardware and software optimisations. The hardware architecture tightly…

Hardware Architecture · Computer Science 2025-11-19 Vineet Kumar , Ajay Kumar M , Yike Li , Shreejith Shanker , Deepu John

In the last decade, we have witnessed exponential growth in the complexity of control systems for safety-critical applications (automotive, robots, industrial automation) and their transition to heterogeneous mixed-criticality systems…

Hardware Architecture · Computer Science 2024-06-12 Michael Rogenmoser , Alessandro Ottaviano , Thomas Benz , Robert Balas , Matteo Perotti , Angelo Garofalo , Luca Benini
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