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DNA storage is now being considered as a new archival storage method for its durability and high information density, but still facing some challenges like high costs and low throughput. By reducing sequencing sample size for decoding…

Information Theory · Computer Science 2025-04-22 Ruiying Cao , Xin Chen

Nowadays a diverse range of physiological data can be captured continuously for various applications in particular wellbeing and healthcare. Such data require efficient methods for classification and analysis. Deep learning algorithms have…

Machine Learning · Computer Science 2018-11-02 Hamid Soleimani , Aliasghar , Makhlooghpour , Wilten Nicola , Claudia Clopath , Emmanuel. M. Drakakis

The recent exponential growth of Large Language Models (LLMs) has relied on GPU-based systems. However, CPUs are emerging as a flexible and lower-cost alternative, especially when targeting inference and reasoning workloads. RISC-V is…

Machine Learning · Computer Science 2025-03-25 Javier J. Poveda Rodrigo , Mohamed Amine Ahmdi , Alessio Burrello , Daniele Jahier Pagliari , Luca Benini

Domain-Specific architectures with accelerators for machine learning and signal processing require efficient bulk data movement and high-bandwidth access to large datasets. Such capabilities are often absent from minimal open-source…

Hardware Architecture · Computer Science 2026-03-16 Philippe Sauter , Thomas Benz , Paul Scheffler , Luca Benini

In the construction of High-Luminosity Large Hadron Collider (HL-LHC) and Future Circular Collider (FCC) experiments, 3D pixel sensors have become indispensable components due to their superior radiation hardness, fast response, and low…

Instrumentation and Detectors · Physics 2025-10-14 Huimin Ji , Zhihua Li , Wenzheng Cheng , Zheng Li , Kai Huang , Jing Wen , Song Liu , Manwen Liu , Jun Luo

Nanopore sequencing technology has the potential to render other sequencing technologies obsolete with its ability to generate long reads and provide portability. However, high error rates of the technology pose a challenge while generating…

Genomics · Quantitative Biology 2019-12-20 Damla Senol Cali , Jeremie S. Kim , Saugata Ghose , Can Alkan , Onur Mutlu

Nanopore based sequencing has demonstrated significant potential for the development of fast, accurate, and cost-efficient fingerprinting techniques for next generation molecular detection and sequencing. We propose a specific multi-layered…

Mesoscale and Nanoscale Physics · Physics 2014-05-15 Towfiq Ahmed , Jason T. Haraldsen , John J. Rehr , Massimiliano Di Ventra , Ivan K. Schuller , Alexander V. Balatsky

Accurate temperature regulation is critical for amperometric DNA analysis to achieve high fidelity, reliability, and throughput. In this work, a 9x6 cell array of mixed-signal CMOS distributed temperature regulators for on-CMOS multi-modal…

Systems and Control · Electrical Eng. & Systems 2022-08-02 Hamed M. Jafari , Xilin Liu , Roman Genov

Cheap high-throughput DNA sequencing may soon become routine not only for human genomes but also for practically anything requiring the identification of living organisms from their DNA: tracking of infectious agents, control of food…

Genomics · Quantitative Biology 2014-03-05 Laurent Gautier , Ole Lund

Nanopore sequencing generates noisy electrical signals that need to be converted into a standard string of DNA nucleotide bases using a computational step called basecalling. The accuracy and speed of basecalling have critical implications…

As the demand for Internet of Things (IoT) and Human-to-Machine Interaction (HMI) increases, modern System-on-Chips (SoCs) offering such solutions are becoming increasingly complex. This intricate design poses significant challenges for…

Signal Processing · Electrical Eng. & Systems 2024-04-25 Aman Kumar , Mark Litterick , Samuele Candido

A rapid and low-cost method to sequence DNA would usher in a revolution in medicine. We propose and theoretically show the feasibility of a protocol for sequencing based on the distributions of transverse electrical currents of…

Soft Condensed Matter · Physics 2015-06-25 Johan Lagerqvist , Michael Zwolak , Massimiliano Di Ventra

Convolutional Neural Networks (CNN) have been widely deployed in diverse application domains. There has been significant progress in accelerating both their training and inference using high-performance GPUs, FPGAs, and custom ASICs for…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-03-07 Guanwen Zhong , Akshat Dubey , Tan Cheng , Tulika Mitra

Pervasive localization is essential for continuous tracking applications, yet existing solutions face challenges in balancing power consumption and accuracy. GPS, while precise, is impractical for continuous tracking of micro-assets due to…

Systems and Control · Electrical Eng. & Systems 2025-05-12 Aritrik Ghosh , Nakul Garg , Nirupam Roy

Radiation measurement relies on pulse detection, which can be performed using various configurations of high-speed analog-to-digital converters (ADCs) and field-programmable gate arrays (FPGAs). For optimal power consumption, design…

Motivation: In this paper we present the latest release of EBIC, a next-generation biclustering algorithm for mining genetic data. The major contribution of this paper is adding support for big data, making it possible to efficiently run…

Genomics · Quantitative Biology 2024-09-05 Patryk Orzechowski , Jason H. Moore

Innovations in Next-Generation Sequencing are enabling generation of DNA sequence data at ever faster rates and at very low cost. Large sequencing centers typically employ hundreds of such systems. Such high-throughput and low-cost…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-07-31 Vasimuddin Md , Sanchit Misra , Heng Li , Srinivas Aluru

The emerging memristor crossbar array based computing circuits exhibit computing speeds and energy efficiency far surpassing those of traditional digital processors. This type of circuits can complete high-dimensional matrix operations in…

Signal Processing · Electrical Eng. & Systems 2025-06-05 Jia-Hui Bi , Shaoshi Yang , Sheng Chen , Ping Zhang

This paper presents the design and analysis of a wearable CMOS biosensor with three different designs of energy-resolution scalable time-based resistance to digital converters (RDC), targeted towards either minimizing the energy/conversion…

Systems and Control · Electrical Eng. & Systems 2020-11-03 Dong-Hyun Seo , Baibhab Chatterjee , Sean Scott , Daniel Valentino , Dimitrios Peroulis , Shreyas Sen

The demand for energy-efficient and high performance embedded systems drives the evolution of new hardware architectures, including concepts like approximate computing. This paper presents a novel reconfigurable embedded platform named…

Hardware Architecture · Computer Science 2024-10-02 Arvin Delavari , Faraz Ghoreishy , Hadi Shahriar Shahhoseini , Sattar Mirzakuchaki