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Related papers: GenAR: Next-Scale Autoregressive Generation for Sp…

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In the current research landscape, multimodal autoregressive (AR) models have shown exceptional capabilities across various domains, including visual understanding and generation. However, complex tasks such as style-aligned text-to-image…

Computer Vision and Pattern Recognition · Computer Science 2025-05-27 Yi Wu , Lingting Zhu , Shengju Qian , Lei Liu , Wandi Qiao , Lequan Yu , Bin Li

Autoregressive (AR) modeling, known for its next-token prediction paradigm, underpins state-of-the-art language and visual generative models. Traditionally, a ``token'' is treated as the smallest prediction unit, often a discrete symbol in…

Computer Vision and Pattern Recognition · Computer Science 2025-03-24 Sucheng Ren , Qihang Yu , Ju He , Xiaohui Shen , Alan Yuille , Liang-Chieh Chen

In recent years, Generative Adversarial Networks have become ubiquitous in both research and public perception, but how GANs convert an unstructured latent code to a high quality output is still an open question. In this work, we…

Computer Vision and Pattern Recognition · Computer Science 2021-06-07 Lucy Chai , Jonas Wulff , Phillip Isola

Autoregressive models have recently shown great promise in visual generation by leveraging discrete token sequences akin to language modeling. However, existing approaches often suffer from inefficiency, either due to token-by-token…

Computer Vision and Pattern Recognition · Computer Science 2025-11-20 Ruiqing Yang , Kaixin Zhang , Zheng Zhang , Shan You , Tao Huang

Deep learning-based nuclei segmentation and classification in pathology images typically rely on large-scale pixel-level manual annotations, which are costly and difficult to obtain across diverse tissues and staining conditions. To address…

Computer Vision and Pattern Recognition · Computer Science 2026-04-28 Kazuya Nishimura , Ryoma Bise , Haruka Hirose , Yasuhiro Kojima

Spatial transcriptomics (ST) enables spatially resolved gene profiling but remains expensive and low-throughput, limiting large-cohort studies and routine clinical use. Predicting spatial gene expression from routine hematoxylin and eosin…

Computer Vision and Pattern Recognition · Computer Science 2026-04-24 Changfan Wang , Xinran Wang , Donghai Liu , Fei Su , Lulu Sun , Zhicheng Zhao , Zhu Meng

In order to understand the complexities of cellular biology, researchers are interested in two important metrics: the genetic expression information of cells and their spatial coordinates within a tissue sample. However, state-of-the art…

Machine Learning · Computer Science 2023-11-02 J. Ding , S. N. Zaman , P. Y. Chen , D. Wang

Controllable image synthesis, which enables fine-grained control over generated outputs, has emerged as a key focus in visual generative modeling. However, controllable generation remains challenging for Visual Autoregressive (VAR) models…

Computer Vision and Pattern Recognition · Computer Science 2025-11-18 Ryan Xu , Dongyang Jin , Yancheng Bai , Rui Lan , Xu Duan , Lei Sun , Xiangxiang Chu

Deep generative models are becoming widely used across science and industry for a variety of purposes. A common challenge is achieving a precise implicit or explicit representation of the data probability density. Recent proposals have…

Machine Learning · Statistics 2021-11-05 Ramon Winterhalder , Marco Bellagente , Benjamin Nachman

Test-time scaling (TTS) has demonstrated remarkable success in enhancing large language models, yet its application to next-token prediction (NTP) autoregressive (AR) image generation remains largely uncharted. Existing TTS approaches for…

Computer Vision and Pattern Recognition · Computer Science 2026-01-07 Harold Haodong Chen , Xianfeng Wu , Wen-Jie Shu , Rongjin Guo , Disen Lan , Harry Yang , Ying-Cong Chen

Spatial transcriptomics has revolutionized tissue analysis by simultaneously mapping gene expression, spatial topography, and histological context across consecutive tissue sections, enabling systematic investigation of spatial…

Applications · Statistics 2025-10-24 Meng Zhou , Shuangge Ma , Mengyun Wu

Autoregressive (AR) models are promising for image generation, yet continuous-token AR variants often trail latent diffusion and masked-generation models. The core issue is heterogeneous variance in VAE latents, which is amplified during AR…

Computer Vision and Pattern Recognition · Computer Science 2026-03-06 Guolin Ke , Hui Xue

Identifying disease-indicative genes is critical for deciphering disease mechanisms and has attracted significant interest in biomedical research. Spatial transcriptomics offers unprecedented insights for the detection of disease-specific…

Methodology · Statistics 2024-09-05 Qicheng Zhao , Qihuang Zhang

The rapid development of spatial transcriptomics (ST) offers new opportunities to explore the gene expression patterns within the spatial microenvironment. Current research integrates pathological images to infer gene expression, addressing…

Computer Vision and Pattern Recognition · Computer Science 2025-03-03 Junchao Zhu , Ruining Deng , Tianyuan Yao , Juming Xiong , Chongyu Qu , Junlin Guo , Siqi Lu , Yucheng Tang , Daguang Xu , Mengmeng Yin , Yu Wang , Shilin Zhao , Yaohong Wang , Haichun Yang , Yuankai Huo

Spatial transcriptomics aims to connect high-resolution histology images with spatially resolved gene expression. To achieve better performance on downstream tasks such as gene expression prediction, large-scale pre-training is required to…

Computer Vision and Pattern Recognition · Computer Science 2025-09-23 Jiahe Qian , Yaoyu Fang , Ziqiao Weng , Xinkun Wang , Lee A. Cooper , Bo Zhou

Generative models make huge progress to the photorealistic image synthesis in recent years. To enable human to steer the image generation process and customize the output, many works explore the interpretable dimensions of the latent space…

Computer Vision and Pattern Recognition · Computer Science 2024-01-11 Jianyuan Wang , Lalit Bhagat , Ceyuan Yang , Yinghao Xu , Yujun Shen , Hongdong Li , Bolei Zhou

Spatially resolved transcriptomics (ST) measures gene expression along with the spatial coordinates of the measurements. The analysis of ST data involves significant computation complexity. In this work, we propose gene expression…

Genomics · Quantitative Biology 2022-05-24 Zhuoyan Xu , Kris Sankaran

Spatial transcriptomics (ST) bridges gene expression and tissue morphology but faces clinical adoption barriers due to technical complexity and prohibitive costs. While computational methods predict gene expression from H&E-stained…

Computer Vision and Pattern Recognition · Computer Science 2025-11-20 Ziqiao Weng , Yaoyu Fang , Jiahe Qian , Xinkun Wang , Lee AD Cooper , Weidong Cai , Bo Zhou

The generative priors of pre-trained latent diffusion models (DMs) have demonstrated great potential to enhance the visual quality of image super-resolution (SR) results. However, the noise sampling process in DMs introduces randomness in…

Image and Video Processing · Electrical Eng. & Systems 2024-09-26 Lingchen Sun , Rongyuan Wu , Jie Liang , Zhengqiang Zhang , Hongwei Yong , Lei Zhang

The integration of single-cell RNA sequencing (scRNA-seq) and spatial transcriptomics (ST) data is crucial for understanding gene expression in spatial context. Existing methods for such integration have limited performance, with structural…

Computer Vision and Pattern Recognition · Computer Science 2025-02-12 Rabeya Tus Sadia , Md Atik Ahamed , Qiang Cheng