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Over the past decade there has been a significant growth in bioinformatics databases, tools and resources. Although, bioinformatics is becoming more specific, increasing the number of bioinformatics-wares has made it difficult for…

The rapid development of the AI agent communication protocols, including the Model Context Protocol (MCP), Agent2Agent (A2A), Agora, and Agent Network Protocol (ANP), is reshaping how AI agents communicate with tools, services, and each…

Cryptography and Security · Computer Science 2026-04-20 Zeynab Anbiaee , Mahdi Rabbani , Mansur Mirani , Gunjan Piya , Igor Opushnyev , Ali Ghorbani , Sajjad Dadkhah

The emergence of large language model agents capable of invoking external tools has created urgent need for formal verification of agent protocols. Two paradigms dominate this space: Schema-Guided Dialogue (SGD), a research framework for…

Artificial Intelligence · Computer Science 2026-03-27 Andreas Schlapbach

Unified multimodal models provide a natural and promising architecture for understanding diverse and complex real-world knowledge while generating high-quality images. However, they still rely primarily on frozen parametric knowledge, which…

Integration of artificial intelligent (AI) agents in higher education is transforming teaching, learning and administrative processes. Although existing AI agents effectively support individual tasks, their implementation remains fragmented…

Artificial Intelligence · Computer Science 2026-05-15 Vidya K Sudarshan , Anushka Sisodia , Reshma A Ramachandra , Sia Batra , Josephine Chong Leng Leng

Explicit modeling of capabilities and skills -- whether based on ontologies, Asset Administration Shells, or other technologies -- requires considerable manual effort and often results in representations that are not easily accessible to…

Software Engineering · Computer Science 2025-12-10 Luis Miguel Vieira da Silva , Aljosha Köcher , Felix Gehlhoff

Multi-access point coordination (MAPC) is a key technology for enhancing throughput in next-generation Wi-Fi within dense overlapping basic service sets. However, existing MAPC protocols rely on static, protocol-defined rules, which limits…

Artificial Intelligence · Computer Science 2025-11-27 Yifan Fan , Le Liang , Peng Liu , Xiao Li , Ziyang Guo , Qiao Lan , Shi Jin , Wen Tong

Artificial Intelligence (AI) will play an essential role in 6G. It will fundamentally reshape the network architecture itself and drive major changes in the design of network entities, interfaces, and procedures. The adoption of agentic AI…

Networking and Internet Architecture · Computer Science 2026-05-05 Purna Sai Garigipati , Onur Ayan , Kishor Chandra Joshi , Xueli An

We introduce Paper2Agent, an automated framework that converts research papers into AI agents. Paper2Agent transforms research output from passive artifacts into active systems that can accelerate downstream use, adoption, and discovery.…

Artificial Intelligence · Computer Science 2025-10-17 Jiacheng Miao , Joe R. Davis , Yaohui Zhang , Jonathan K. Pritchard , James Zou

Motivation: The rapid growth of biological data has intensified the need for transparent, reproducible, and well-documented computational workflows. The ability to clearly connect the steps of a workflow in the code with their description…

Computation and Language · Computer Science 2026-03-10 Clémence Sebe , Olivier Ferret , Aurélie Névéol , Mahdi Esmailoghli , Ulf Leser , Sarah Cohen-Boulakia

Bioinformatics has witnessed a paradigm shift with the increasing integration of artificial intelligence (AI), particularly through the adoption of foundation models (FMs). These AI techniques have rapidly advanced, addressing historical…

Quantitative Methods · Quantitative Biology 2024-02-08 Qing Li , Zhihang Hu , Yixuan Wang , Lei Li , Yimin Fan , Irwin King , Le Song , Yu Li

Current approaches to AI agent orchestration typically involve building multi-agent frameworks that manage context passing, memory, error handling, and step coordination through code. These frameworks work well for complex, concurrent…

Artificial Intelligence · Computer Science 2026-03-19 Jake Van Clief , David McDermott

Over the past decade, artificial intelligence (AI) methods in pathology have advanced substantially. However, integration into routine clinical practice has been slow due to numerous challenges, including technical and regulatory hurdles in…

The Model Context Protocol (MCP) is an emerging standard designed to enable seamless interaction between Large Language Model (LLM) applications and external tools or resources. Within a short period, thousands of MCP services have been…

Cryptography and Security · Computer Science 2025-09-16 Hao Song , Yiming Shen , Wenxuan Luo , Leixin Guo , Ting Chen , Jiashui Wang , Beibei Li , Xiaosong Zhang , Jiachi Chen

Biomedical data is inherently multimodal, comprising physical measurements and natural language narratives. A generalist biomedical AI model needs to simultaneously process different modalities of data, including text and images. Therefore,…

The rapid growth in the use of Large Language Models (LLMs) and AI Agents as part of software development and deployment is revolutionizing the information technology landscape. While code generation receives significant attention, a…

This paper introduces \textbf{FinMCP-Bench}, a novel benchmark for evaluating large language models (LLMs) in solving real-world financial problems through tool invocation of financial model context protocols. FinMCP-Bench contains 613…

Artificial Intelligence · Computer Science 2026-03-27 Jie Zhu , Yimin Tian , Boyang Li , Kehao Wu , Zhongzhi Liang , Junhui Li , Xianyin Zhang , Lifan Guo , Feng Chen , Yong Liu , Chi Zhang

In today's world of big data, computational analysis has become a key driver of biomedical research. Recent exponential growth in the volume of available omics data has reshaped the landscape of contemporary biology, creating demand for a…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-12-09 Jaqueline J. Brito , Thiago Mosqueiro , Jeremy Rotman , Victor Xue , Douglas J. Chapski , Juan De la Hoz , Paulo Matias , Lana Martin , Alex Zelikovsky , Matteo Pellegrinni , Serghei Mangul

The rapid rise of Large Language Models (LLMs)-based intelligent agents underscores the need for robust, scalable evaluation frameworks. Existing methods rely on static benchmarks and labor-intensive data collection, limiting practical…

Artificial Intelligence · Computer Science 2025-08-05 Zhiwei Liu , Jielin Qiu , Shiyu Wang , Jianguo Zhang , Zuxin Liu , Roshan Ram , Haolin Chen , Weiran Yao , Shelby Heinecke , Silvio Savarese , Huan Wang , Caiming Xiong