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Accurate brain tumor diagnosis relies on the assessment of multiple Magnetic Resonance Imaging (MRI) sequences. However, in clinical practice, the acquisition of certain sequences may be affected by factors like motion artifacts or contrast…

Image and Video Processing · Electrical Eng. & Systems 2025-05-30 Moinak Bhattacharya , Saumya Gupta , Annie Singh , Chao Chen , Gagandeep Singh , Prateek Prasanna

Brain age gap estimation (BrainAGE) is a promising imaging-derived biomarker of neurobiological aging and disease risk, yet current approaches rely predominantly on T1-weighted structural MRI (T1w), overlooking functional vascular changes…

Image and Video Processing · Electrical Eng. & Systems 2025-12-10 Jordan Jomsky , Kay C. Igwe , Zongyu Li , Yiren Zhang , Max Lashley , Tal Nuriel , Andrew Laine , Jia Guo

Cognitive neuroscience explores the mechanisms of cognition by studying its structural and functional brain correlates. Here, we report the first systematic review that assesses how information from structural and functional neuroimaging…

Neurons and Cognition · Quantitative Biology 2022-02-07 Marta Czime Litwińczuk , Nelson Trujillo-Barreto , Nils Muhlert , Lauren Cloutman , Anna Woollams

The human brain is the most complex object of study we encounter today. Mapping the neuronal-level connections between the more than 80 billion neurons in the brain is a hopeless task for science. By the recent advancement of magnetic…

Neurons and Cognition · Quantitative Biology 2020-09-01 Balint Varga , Vince Grolmusz

Learning motor control for muscle-driven musculoskeletal models is hindered by the computational cost of biomechanically accurate simulation and the scarcity of validated, open full-body models. Here we present MuscleMimic, an open-source…

In recent years, functional magnetic resonance imaging has emerged as a powerful tool for investigating the human brain's functional connectivity networks. Related studies demonstrate that functional connectivity networks in the human brain…

Artificial Intelligence · Computer Science 2023-09-18 Xiangzhu Meng , Wei Wei , Qiang Liu , Shu Wu , Liang Wang

In recent years, a plethora of open-source foundation models have emerged, achieving remarkable progress in some widely attended fields, with performance being quite close to that of closed-source models. However, in high-value but more…

Machine Learning · Computer Science 2025-08-26 Lei Bai , Zhongrui Cai , Yuhang Cao , Maosong Cao , Weihan Cao , Chiyu Chen , Haojiong Chen , Kai Chen , Pengcheng Chen , Ying Chen , Yongkang Chen , Yu Cheng , Pei Chu , Tao Chu , Erfei Cui , Ganqu Cui , Long Cui , Ziyun Cui , Nianchen Deng , Ning Ding , Nanqing Dong , Peijie Dong , Shihan Dou , Sinan Du , Haodong Duan , Caihua Fan , Ben Gao , Changjiang Gao , Jianfei Gao , Songyang Gao , Yang Gao , Zhangwei Gao , Jiaye Ge , Qiming Ge , Lixin Gu , Yuzhe Gu , Aijia Guo , Qipeng Guo , Xu Guo , Conghui He , Junjun He , Yili Hong , Siyuan Hou , Caiyu Hu , Hanglei Hu , Jucheng Hu , Ming Hu , Zhouqi Hua , Haian Huang , Junhao Huang , Xu Huang , Zixian Huang , Zhe Jiang , Lingkai Kong , Linyang Li , Peiji Li , Pengze Li , Shuaibin Li , Tianbin Li , Wei Li , Yuqiang Li , Dahua Lin , Junyao Lin , Tianyi Lin , Zhishan Lin , Hongwei Liu , Jiangning Liu , Jiyao Liu , Junnan Liu , Kai Liu , Kaiwen Liu , Kuikun Liu , Shichun Liu , Shudong Liu , Wei Liu , Xinyao Liu , Yuhong Liu , Zhan Liu , Yinquan Lu , Haijun Lv , Hongxia Lv , Huijie Lv , Qitan Lv , Ying Lv , Chengqi Lyu , Chenglong Ma , Jianpeng Ma , Ren Ma , Runmin Ma , Runyuan Ma , Xinzhu Ma , Yichuan Ma , Zihan Ma , Sixuan Mi , Junzhi Ning , Wenchang Ning , Xinle Pang , Jiahui Peng , Runyu Peng , Yu Qiao , Jiantao Qiu , Xiaoye Qu , Yuan Qu , Yuchen Ren , Fukai Shang , Wenqi Shao , Junhao Shen , Shuaike Shen , Chunfeng Song , Demin Song , Diping Song , Chenlin Su , Weijie Su , Weigao Sun , Yu Sun , Qian Tan , Cheng Tang , Huanze Tang , Kexian Tang , Shixiang Tang , Jian Tong , Aoran Wang , Bin Wang , Dong Wang , Lintao Wang , Rui Wang , Weiyun Wang , Wenhai Wang , Jiaqi Wang , Yi Wang , Ziyi Wang , Ling-I Wu , Wen Wu , Yue Wu , Zijian Wu , Linchen Xiao , Shuhao Xing , Chao Xu , Huihui Xu , Jun Xu , Ruiliang Xu , Wanghan Xu , GanLin Yang , Yuming Yang , Haochen Ye , Jin Ye , Shenglong Ye , Jia Yu , Jiashuo Yu , Jing Yu , Fei Yuan , Yuhang Zang , Bo Zhang , Chao Zhang , Chen Zhang , Hongjie Zhang , Jin Zhang , Qiaosheng Zhang , Qiuyinzhe Zhang , Songyang Zhang , Taolin Zhang , Wenlong Zhang , Wenwei Zhang , Yechen Zhang , Ziyang Zhang , Haiteng Zhao , Qian Zhao , Xiangyu Zhao , Xiangyu Zhao , Bowen Zhou , Dongzhan Zhou , Peiheng Zhou , Yuhao Zhou , Yunhua Zhou , Dongsheng Zhu , Lin Zhu , Yicheng Zou

Biomedical data is inherently multimodal, consisting of electronic health records, medical imaging, digital pathology, genome sequencing, wearable sensors, and more. The application of artificial intelligence tools to these multifaceted…

Machine Learning · Computer Science 2024-08-26 Shentong Mo , Paul Pu Liang

Recent advances in large-scale pre-trained Electroencephalogram (EEG) models have shown great promise, driving progress in Brain-Computer Interfaces (BCIs) and healthcare applications. However, despite their success, many existing…

Machine Learning · Computer Science 2025-10-07 Konstantinos Barmpas , Na Lee , Yannis Panagakis , Dimitrios A. Adamos , Nikolaos Laskaris , Stefanos Zafeiriou

Structural and functional neuroimaging modalities provide complementary windows into brain organization: structural imaging characterizes neural tissue anatomy and microstructure, while functional imaging captures dynamic patterns of neural…

Methodology · Statistics 2026-03-24 Sakul Mahat , Sharmistha Guha , Jessica Bernard

Purpose: This study demonstrated an MR signal multitask learning method for 3D simultaneous segmentation and relaxometry of human brain tissues. Materials and Methods: A 3D inversion-prepared balanced steady-state free precession sequence…

Medical Physics · Physics 2019-12-02 Peng Cao , Jing Liu , Shuyu Tang , Andrew Leynes , Janine M. Lupo , Duan Xu , Peder E. Z. Larson

Brain lesion segmentation plays an essential role in neurological research and diagnosis. As brain lesions can be caused by various pathological alterations, different types of brain lesions tend to manifest with different characteristics…

Image and Video Processing · Electrical Eng. & Systems 2024-07-17 Xinru Zhang , Ni Ou , Berke Doga Basaran , Marco Visentin , Mengyun Qiao , Renyang Gu , Cheng Ouyang , Yaou Liu , Paul M. Matthew , Chuyang Ye , Wenjia Bai

Decoding visual information from electroencephalography (EEG) has recently achieved promising results, primarily focusing on reconstructing two-dimensional (2D) images from brain activity. However, the reconstruction of three-dimensional…

Computer Vision and Pattern Recognition · Computer Science 2026-04-10 Emanuele Balloni , Emanuele Frontoni , Chiara Matti , Marina Paolanti , Roberto Pierdicca , Emiliano Santarnecchi

Current fMRI foundation models primarily rely on a limited range of brain states and mismatched pretraining tasks, restricting their ability to learn generalized representations across diverse brain states. We present \textit{Brain-DiT}, a…

Computer Vision and Pattern Recognition · Computer Science 2026-04-15 Junfeng Xia , Wenhao Ye , Xuanye Pan , Xinke Shen , Mo Wang , Quanying Liu

Unifying visual understanding and generation within a single multimodal framework remains a significant challenge, as the two inherently heterogeneous tasks require representations at different levels of granularity. Current approaches that…

Computer Vision and Pattern Recognition · Computer Science 2025-04-23 Size Wu , Wenwei Zhang , Lumin Xu , Sheng Jin , Zhonghua Wu , Qingyi Tao , Wentao Liu , Wei Li , Chen Change Loy

Recently, leveraging big data in deep learning has led to significant performance improvements, as confirmed in applications like mental state decoding using fMRI data. However, fMRI datasets remain relatively small in scale, and the…

Neurons and Cognition · Quantitative Biology 2024-10-08 Yuto Nishimura , Masataka Sawayama , Ayumu Yamashita , Hideki Nakayama , Kaoru Amano

Neuron segmentation from electron microscopy (EM) volumes is crucial for understanding brain circuits, yet the complex neuronal structures in high-resolution EM images present significant challenges. EM data exhibits unique characteristics…

Computer Vision and Pattern Recognition · Computer Science 2025-08-26 Yinda Chen , Haoyuan Shi , Xiaoyu Liu , Te Shi , Ruobing Zhang , Dong Liu , Zhiwei Xiong , Feng Wu

Accurate segmentation of tubular structures in medical images, such as vessels and airway trees, is crucial for computer-aided diagnosis, radiotherapy, and surgical planning. However, significant challenges exist in algorithm design when…

Image and Video Processing · Electrical Eng. & Systems 2025-04-11 Yi Huang , Ke Zhang , Wei Liu , Yuanyuan Wang , Vishal M. Patel , Le Lu , Xu Han , Dakai Jin , Ke Yan

Integrating brain imaging data with clinical reports offers a valuable opportunity to leverage complementary multimodal information for more effective and timely diagnosis in practical clinical settings. This approach has gained significant…

Computer Vision and Pattern Recognition · Computer Science 2025-08-12 Jing Zhang , Xiaowei Yu , Minheng Chen , Lu Zhang , Tong Chen , Yan Zhuang , Chao Cao , Yanjun Lyu , Li Su , Tianming Liu , Dajiang Zhu

Understanding the structure of the brain, and how it changes with time and disease, is a core goal of structural neuroimaging. Contemporary approaches to structural brain analysis are dominated by voxel-wise, mass-univariate methods such as…

Algebraic Topology · Mathematics 2026-04-28 Donato Quiccione , Mariam Pirashvili , Nathan Broomhead , Sean J. Fallon