Related papers: Computing k-mers in Graphs

In this paper we give upper bounds on the number of minimal separators and potential maximal cliques of graphs w.r.t. two graph parameters, namely vertex cover ($\operatorname{vc}$) and modular width ($\operatorname{mw}$). We prove that for…

The Weisfeiler-Leman (WL) dimension is an established measure for the inherent descriptive complexity of graphs and relational structures. It corresponds to the number of variables that are needed and sufficient to define the object of…

Let $G=(V,E)$ be an undirected graph without loops and multiple edges. A subset $C\subseteq V$ is called \emph{identifying} if for every vertex $x\in V$ the intersection of $C$ and the closed neighbourhood of $x$ is nonempty, and these…

A key concept for many graph layout algorithms is planarity, a graph property that allows to draw vertices and edges crossing-free in the plane. Important is the generalization to $k$-planar graphs, which can be drawn in the plane with at…

We study the problem $\#\mathrm{EdgeSub}(\Phi)$ of counting $k$-edge subgraphs satisfying a given graph property $\Phi$ in a large host graph $G$. Building upon the breakthrough result of Curticapean, Dell and Marx (STOC 17), we express the…

A $k$-truss is an edge-induced subgraph $H$ such that each of its edges belongs to at least $k-2$ triangles of $H$. This notion has been introduced around ten years ago in social network analysis and security, as a form of cohesive subgraph…

The NP-complete $k$-Path problem asks whether a given undirected graph has a (simple) path of length at least $k$. We prove that $k$-Path has polynomial-size Turing kernels when restricted to planar graphs, graphs of bounded degree,…

In bioinformatics, minimizers have become an inescapable method for handling $k$-mers (words of fixed size $k$) extracted from DNA or RNA sequencing, whether for sampling, storage, querying or partitioning. According to some fixed order on…

The $k$-dimensional Weisfeiler-Leman procedure ($k$-WL), which colors $k$-tuples of vertices in rounds based on the neighborhood structure in the graph, has proven to be immensely fruitful in the algorithmic study of Graph Isomorphism. More…

Let $G = (V,E)$ be a graph on $n$ vertices and $f: V\rightarrow [1,n]$ a one to one map of $V$ onto the integers $1$ through $n$. Let $dilation(f) =$ max$\{ |f(v) - f(w)|: vw\in E \}$. Define the {\it bandwidth} $B(G)$ of $G$ to be the…

Graph separators are a ubiquitous tool in graph theory and computer science. However, in some applications, their usefulness is limited by the fact that the separator can be as large as $\Omega(\sqrt{n})$ in graphs with $n$ vertices. This…

We consider the problems of finding optimal identifying codes, (open) locating-dominating sets and resolving sets (denoted IDENTIFYING CODE, (OPEN) LOCATING-DOMINATING SET and METRIC DIMENSION) of an interval or a permutation graph. In…

The $k$-dimensional Weisfeiler-Leman algorithm is a powerful tool in graph isomorphism testing. For an input graph $G$, the algorithm determines a canonical coloring of $s$-tuples of vertices of $G$ for each $s$ between 1 and $k$. We say…

We study the $k$-connectivity augmentation problem ($k$-CAP) in the single-pass streaming model. Given a $(k-1)$-edge connected graph $G=(V,E)$ that is stored in memory, and a stream of weighted edges $L$ with weights in $\{0,1,\dots,W\}$,…

We consider the problem of testing graph cluster structure: given access to a graph $G=(V, E)$, can we quickly determine whether the graph can be partitioned into a few clusters with good inner conductance, or is far from any such graph?…

A $K_r$-factor of a graph $G$ is a collection of vertex-disjoint $r$-cliques covering $V(G)$. We prove the following algorithmic version of the classical Hajnal--Szemer\'edi Theorem in graph theory, when $r$ is considered as a constant.…

We consider the $k$-Center problem and some generalizations. For $k$-Center a set of $k$ center vertices needs to be found in a graph $G$ with edge lengths, such that the distance from any vertex of $G$ to its nearest center is minimized.…

We show that the VC-dimension of a graph can be computed in time $n^{\log d+1} d^{O(d)}$, where $d$ is the degeneracy of the input graph. The core idea of our algorithm is a data structure to efficiently query the number of vertices that…

Identifying the most frequent induced subgraph of size $k$ in a target graph is a fundamental graph mining problem with direct implications for Web-related data mining and social network analysis. Despite its importance, finding the most…

We investigate the complexity of several fundamental polynomial-time solvable problems on graphs and on matrices, when the given instance has low treewidth; in the case of matrices, we consider the treewidth of the graph formed by non-zero…