English
Related papers

Related papers: Computing k-mers in Graphs

200 papers

Motivated by an application from geodesy, we introduce a novel clustering problem which is a $k$-center (or k-diameter) problem with a side constraint. For the side constraint, we are given an undirected connectivity graph $G$ on the input…

Data Structures and Algorithms · Computer Science 2023-10-19 Lukas Drexler , Jan Eube , Kelin Luo , Dorian Reineccius , Heiko Röglin , Melanie Schmidt , Julian Wargalla

We define the (random) $k$-cut number of a rooted graph to model the difficulty of the destruction of a resilient network. The process is as the cut model of Meir and Moon except now a node must be cut $k$ times before it is destroyed. The…

Probability · Mathematics 2020-04-21 Xing Shi Cai , Luc Devroye , Cecilia Holmgren , Fiona Skerman

The $k$-independence number of a graph is the maximum size of a set of vertices at pairwise distance greater than $k$. A graph is called $k$-partially walk-regular if the number of closed walks of a given length $l\le k$, rooted at a vertex…

Combinatorics · Mathematics 2019-11-26 M. A. Fiol

For a well-studied family of domination-type problems, in bounded-treewidth graphs, we investigate whether it is possible to find faster algorithms. For sets $\sigma,\rho$ of non-negative integers, a $(\sigma,\rho)$-set of a graph $G$ is a…

Computational Complexity · Computer Science 2023-06-07 Jacob Focke , Dániel Marx , Fionn Mc Inerney , Daniel Neuen , Govind S. Sankar , Philipp Schepper , Philip Wellnitz

Dense subgraph discovery is an important graph-mining primitive with a variety of real-world applications. One of the most well-studied optimization problems for dense subgraph discovery is the densest subgraph problem, where given an…

Data Structures and Algorithms · Computer Science 2021-10-26 Francesco Bonchi , David García-Soriano , Atsushi Miyauchi , Charalampos E. Tsourakakis

In this paper, we provide faster algorithms for computing various fundamental quantities associated with random walks on a directed graph, including the stationary distribution, personalized PageRank vectors, hitting times, and escape…

Data Structures and Algorithms · Computer Science 2016-11-03 Michael B. Cohen , Jon Kelner , John Peebles , Richard Peng , Aaron Sidford , Adrian Vladu

Given query access to an undirected graph $G$, we consider the problem of computing a $(1\pm\epsilon)$-approximation of the number of $k$-cliques in $G$. The standard query model for general graphs allows for degree queries, neighbor…

Data Structures and Algorithms · Computer Science 2018-11-13 Talya Eden , Dana Ron , C. Seshadhri

Given a graph $G=(V,E)$ and an integer $k$, the Minimum Membership Dominating Set (MMDS) problem seeks to find a dominating set $S \subseteq V$ of $G$ such that for each $v \in V$, $|N[v] \cap S|$ is at most $k$. We investigate the…

Data Structures and Algorithms · Computer Science 2021-10-14 Akanksha Agrawal , Pratibha Choudhary , N. S. Narayanaswamy , K. K. Nisha , Vijayaragunathan Ramamoorthi

We study tensor networks as a model of arithmetic computation for evaluating multilinear maps. These capture any algorithm based on low border rank tensor decompositions, such as $O(n^{\omega+\epsilon})$ time matrix multiplication, and in…

Computational Complexity · Computer Science 2018-11-16 Per Austrin , Petteri Kaski , Kaie Kubjas

We consider the problem of estimating the graph size, where one is given only local access to the graph. We formally define a query model in which one starts with a \emph{seed} node and is allowed to make queries about neighbours of nodes…

Data Structures and Algorithms · Computer Science 2017-02-15 Varun Kanade , Frederik Mallmann-Trenn , Victor Verdugo

Motivated by applications in graph drawing and information visualization, we examine the planar split thickness of a graph, that is, the smallest $k$ such that the graph is $k$-splittable into a planar graph. A $k$-split operation…

The problem of counting subgraphs or graphlets under local differential privacy is an important challenge that has attracted significant attention from researchers. However, much of the existing work focuses on small graphlets like…

Social and Information Networks · Computer Science 2025-05-20 Vorapong Suppakitpaisarn , Donlapark Ponnoprat , Nicha Hirankarn , Quentin Hillebrand

We obtain the following new coloring results: * A 3-colorable graph on $n$ vertices with maximum degree~$\Delta$ can be colored, in polynomial time, using $O((\Delta \log\Delta)^{1/3} \cdot\log{n})$ colors. This slightly improves an…

Data Structures and Algorithms · Computer Science 2016-08-31 Eran Halperin , Ram Nathaniel , Uri Zwick

Many algorithms have been developed for NP-hard problems on graphs with small treewidth $k$. For example, all problems that are expressable in linear extended monadic second order can be solved in linear time on graphs of bounded treewidth.…

Data Structures and Algorithms · Computer Science 2016-05-17 Frank Kammer , Torsten Tholey

Studies on Quantum Computing have been developed since the 1980s, motivating researches on quantum algorithms better than any classical algorithm possible. An example of such algorithms is Grover's algorithm, capable of finding $k$ (marked)…

Quantum Physics · Physics 2023-12-08 Gustavo Alves Bezerra

We consider relations between the size, treewidth, and local crossing number (maximum number of crossings per edge) of graphs embedded on topological surfaces. We show that an $n$-vertex graph embedded on a surface of genus $g$ with at most…

Combinatorics · Mathematics 2017-07-18 Vida Dujmović , David Eppstein , David R. Wood

A graph $G=(V,E)$ is representable if there exists a word $W$ over the alphabet $V$ such that letters $x$ and $y$ alternate in $W$ if and only if $(x,y)\in E$ for each $x\neq y$. If $W$ is $k$-uniform (each letter of $W$ occurs exactly $k$…

Combinatorics · Mathematics 2008-10-03 Magnus Mar Halldorsson , Sergey Kitaev , Artem Pyatkin

The rapid expansion of genomic sequence data calls for new methods to achieve robust sequence representations. Existing techniques often neglect intricate structural details, emphasizing mainly contextual information. To address this, we…

Machine Learning · Computer Science 2023-12-08 Kacper Kapuśniak , Manuel Burger , Gunnar Rätsch , Amir Joudaki

The question to enumerate all inclusion-minimal connected dominating sets in a graph of order $n$ in time significantly less than $2^n$ is an open question that was asked in many places. We answer this question affirmatively, by providing…

Computational Complexity · Computer Science 2022-05-03 Faisal Abu-Khzam , Henning Fernau , Benjamin Gras , Mathieu Liedloff , Kevin Mann

In this paper, we show that computing canonical labelings of graphs of bounded rank-width is in $\textsf{TC}^{2}$. Our approach builds on the framework of K\"obler & Verbitsky (CSR 2008), who established the analogous result for graphs of…

Data Structures and Algorithms · Computer Science 2024-04-26 Michael Levet , Puck Rombach , Nicholas Sieger
‹ Prev 1 4 5 6 7 8 10 Next ›