Related papers: Predicting Antibiotic Resistance Patterns Using Se…

Consumption of antimicrobial drugs, such as antibiotics, is linked with antimicrobial resistance. Surveillance of antimicrobial drug consumption is therefore an important element in dealing with antimicrobial resistance. Many countries lack…

Online shopping stores have grown steadily over the past few years. Due to the massive growth of these businesses, the detection of fake reviews has attracted attention. Fake reviews are seriously trying to mislead customers and thereby…

Negation is an important characteristic of language, and a major component of information extraction from text. This subtask is of considerable importance to the biomedical domain. Over the years, multiple approaches have been explored to…

Sentiment Analysis is an important algorithm in Natural Language Processing which is used to detect sentiment within some text. In our project, we had chosen to work on analyzing reviews of various drugs which have been reviewed in form of…

We investigate MT evaluation metric performance on adversarially-synthesized texts, to shed light on metric robustness. We experiment with word- and character-level attacks on three popular machine translation metrics: BERTScore, BLEURT,…

Contextualized representations from a pre-trained language model are central to achieve a high performance on downstream NLP task. The pre-trained BERT and A Lite BERT (ALBERT) models can be fine-tuned to give state-ofthe-art results in…

Models based on large-pretrained language models, such as S(entence)BERT, provide effective and efficient sentence embeddings that show high correlation to human similarity ratings, but lack interpretability. On the other hand, graph…

Antimicrobial resistance (AMR) poses a mounting global health crisis, requiring rapid and reliable prediction frameworks that capture its complex evolutionary dynamics. Traditional antimicrobial susceptibility testing (AST), while accurate,…

Disease risk prediction has attracted increasing attention in the field of modern healthcare, especially with the latest advances in artificial intelligence (AI). Electronic health records (EHRs), which contain heterogeneous patient…

BACKGROUND: In this study, we investigated the efficacy of current state-of-the-art neural sentence embedding models for semantic similarity estimation of sentences from biomedical literature. We trained different neural embedding models on…

With increasing popularity of social media platforms hate speech is emerging as a major concern, where it expresses abusive speech that targets specific group characteristics, such as gender, religion or ethnicity to spread violence.…

Clinical word embeddings are extensively used in various Bio-NLP problems as a state-of-the-art feature vector representation. Although they are quite successful at the semantic representation of words, due to the dataset - which…

We explore advanced fine-tuning techniques to boost BERT's performance in sentiment analysis, paraphrase detection, and semantic textual similarity. Our approach leverages SMART regularization to combat overfitting, improves hyperparameter…

Identification of antimicrobial peptides is an important and necessary issue in today's era. Antimicrobial peptides are essential as an alternative to antibiotics for biomedical applications and many other practical applications. These…

This paper presents new state-of-the-art models for three tasks, part-of-speech tagging, syntactic parsing, and semantic parsing, using the cutting-edge contextualized embedding framework known as BERT. For each task, we first replicate and…

We conduct a thorough study to diagnose the behaviors of pre-trained language encoders (ELMo, BERT, and RoBERTa) when confronted with natural grammatical errors. Specifically, we collect real grammatical errors from non-native speakers and…

Antimicrobial resistance (AMR) poses a global health threat, reducing the effectiveness of antibiotics and complicating clinical decision-making. To address this challenge, we introduce abx_amr_simulator, a Python-based simulation package…

The contextual word embedding model, BERT, has proved its ability on downstream tasks with limited quantities of annotated data. BERT and its variants help to reduce the burden of complex annotation work in many interdisciplinary research…

Biomedical Named Entity Recognition (NER) is a fundamental task of Biomedical Natural Language Processing for extracting relevant information from biomedical texts, such as clinical records, scientific publications, and electronic health…

The rapid mutation of the influenza virus threatens public health. Reassortment among viruses with different hosts can lead to a fatal pandemic. However, it is difficult to detect the original host of the virus during or after an outbreak…