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Global mobility flow data are at the heart of spatial epidemiological models used to predict infectious disease behavior but this wealth of data on human mobility has been largely neglected by reconstructions of pathogen evolutionary…

The growing impact of global climate change amplifies the need for accurate and reliable weather forecasting. Traditional autoregressive approaches, while effective for temporal modeling, suffer from error accumulation in long-term…

Computer Vision and Pattern Recognition · Computer Science 2024-10-01 Doyi Kim , Minseok Seo , Hakjin Lee , Junghoon Seo

A central challenge in every field of biology is to use existing measurements to predict the outcomes of future experiments. In this work, we consider the wealth of antibody inhibition data against variants of the influenza virus. Due to…

Quantitative Methods · Quantitative Biology 2023-07-27 Tal Einav , Rong Ma

Patient representation learning based on electronic health records (EHR) is a critical task for disease prediction. This task aims to effectively extract useful information on dynamic features. Although various existing works have achieved…

Machine Learning · Computer Science 2024-01-02 Ziyue Yu , Jiayi Wang , Wuman Luo , Rita Tse , Giovanni Pau

We propose TAMER, a Test-time Adaptive MoE-driven framework for Electronic Health Record (EHR) Representation learning. TAMER introduces a framework where a Mixture-of-Experts (MoE) architecture is co-designed with Test-Time Adaptation…

Machine Learning · Computer Science 2025-03-19 Yinghao Zhu , Xiaochen Zheng , Ahmed Allam , Michael Krauthammer

We investigate model assessment and selection in a changing environment, by synthesizing datasets from both the current time period and historical epochs. To tackle unknown and potentially arbitrary temporal distribution shift, we develop…

Machine Learning · Computer Science 2024-06-05 Elise Han , Chengpiao Huang , Kaizheng Wang

Increased availability of epidemiological data, novel digital data streams, and the rise of powerful machine learning approaches have generated a surge of research activity on real-time epidemic forecast systems. In this paper, we propose…

Social and Information Networks · Computer Science 2021-09-15 Ioanna Miliou , Xinyue Xiong , Salvatore Rinzivillo , Qian Zhang , Giulio Rossetti , Fosca Giannotti , Dino Pedreschi , Alessandro Vespignani

For epidemics control and prevention, timely insights of potential hot spots are invaluable. Alternative to traditional epidemic surveillance, which often lags behind real time by weeks, big data from the Internet provide important…

Applications · Statistics 2020-12-25 Shihao Yang , Shaoyang Ning , S. C. Kou

Time is implicitly embedded in classification process: classifiers are usually built on existing data while to be applied on future data whose distributions (e.g., label and token) may change. However, existing state-of-the-art…

Computation and Language · Computer Science 2025-02-14 Weisi Liu , Guangzeng Han , Xiaolei Huang

Forecasting the future course of epidemics has always been one of the main goals of epidemic modelling. This chapter reviews statistical methods to quantify the accuracy of epidemic forecasts. We distinguish point and probabilistic…

Methodology · Statistics 2019-12-19 Leonhard Held , Sebastian Meyer

Accuracy and timeliness are indeed often conflicting goals in prediction tasks. Premature predictions may yield a higher rate of false alarms, whereas delaying predictions to gather more information can render them too late to be useful. In…

Machine Learning · Computer Science 2024-06-19 Wei Shao , Yufan Kang , Ziyan Peng , Xiao Xiao , Lei Wang , Yuhui Yang , Flora D Salim

With the increase of global economic activities and high energy demand, many countries have raised concerns about air pollution. However, air quality prediction is a challenging issue due to the complex interaction of many factors. In this…

Signal Processing · Electrical Eng. & Systems 2020-03-06 Tien-Cuong Bui , Joonyoung Kim , Taewoo Kang , Donghyeon Lee , Junyoung Choi , Insoon Yang , Kyomin Jung , Sang Kyun Cha

In epidemic modeling, outliers can distort parameter estimation and ultimately lead to misguided public health decisions. Although there are existing robust methods that can mitigate this distortion, the ability to simultaneously detect…

Methodology · Statistics 2025-07-15 Haoming Shi , Shan Yu , Eric C. Chi

From medical diagnosis to autonomous vehicles, critical applications rely on the integration of multiple heterogeneous data modalities. Multimodal Variational Autoencoders offer versatile and scalable methods for generating unobserved…

Machine Learning · Computer Science 2025-02-07 Agathe Senellart , Stéphanie Allassonnière

Time series forecasting is a critical task for artificial intelligence with numerous real-world applications. Traditional approaches primarily rely on historical time series data to predict the future values. However, in practical…

Sepsis remains one of the most complex and heterogeneous syndromes in intensive care, characterized by diverse physiological trajectories and variable responses to treatment. While deep learning models perform well in the early prediction…

Machine Learning · Computer Science 2026-04-01 Vincent Lemaire , Nédra Meloulli , Pierre Jaquet

Long-term time series forecasting (LTSF) offers broad utility in practical settings like energy consumption and weather prediction. Accurately predicting long-term changes, however, is demanding due to the intricate temporal patterns and…

Machine Learning · Computer Science 2025-05-19 Boshi Gao , Qingjian Ni , Fanbo Ju , Yu Chen , Ziqi Zhao

Infectious disease modeling and forecasting have played a key role in helping assess and respond to epidemics and pandemics. Recent work has leveraged data on disease peak infection and peak hospital incidence to fit compartmental models…

Accurate forecasting of infectious disease incidence is critical for public health planning and timely intervention. While most data-driven forecasting approaches rely primarily on historical data from a single country, such data are often…

Populations and Evolution · Quantitative Biology 2026-01-29 Zacharias Komodromos , Kleanthis Malialis , Artemis Kontou , Panayiotis Kolios

Tailoring treatments to individual needs is a central goal in fields such as medicine. A key step toward this goal is estimating Heterogeneous Treatment Effects (HTE) - the way treatments impact different subgroups. While crucial, HTE…

Machine Learning · Statistics 2025-07-30 Tomer Meir , Uri Shalit , Malka Gorfine