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Drug discovery aims to find novel compounds with specified chemical property profiles. In terms of generative modeling, the goal is to learn to sample molecules in the intersection of multiple property constraints. This task becomes…

Machine Learning · Computer Science 2020-07-06 Wengong Jin , Regina Barzilay , Tommi Jaakkola

Counterfactual explanations emerge as a powerful approach in explainable AI, providing what-if scenarios that reveal how minimal changes to an input time series can alter the model's prediction. This work presents a survey of recent…

Machine Learning · Computer Science 2026-03-31 Udo Schlegel , Thomas Seidl

Counterfactual explanations have been a popular method of post-hoc explainability for a variety of settings in Machine Learning. Such methods focus on explaining classifiers by generating new data points that are similar to a given…

Machine Learning · Computer Science 2024-10-21 Joshua Nathaniel Williams , Anurag Katakkar , Hoda Heidari , J. Zico Kolter

There are now many explainable AI methods for understanding the decisions of a machine learning model. Among these are those based on counterfactual reasoning, which involve simulating features changes and observing the impact on the…

Machine Learning · Computer Science 2024-04-15 Vincent Lemaire , Nathan Le Boudec , Victor Guyomard , Françoise Fessant

By providing explanations for users and system designers to facilitate better understanding and decision making, explainable recommendation has been an important research problem. In this paper, we propose Counterfactual Explainable…

Information Retrieval · Computer Science 2023-02-21 Juntao Tan , Shuyuan Xu , Yingqiang Ge , Yunqi Li , Xu Chen , Yongfeng Zhang

Machines are being increasingly used in decision-making processes, resulting in the realization that decisions need explanations. Unfortunately, an increasing number of these deployed models are of a 'black-box' nature where the reasoning…

Artificial Intelligence · Computer Science 2023-11-07 Sopam Dasgupta

Activity cliffs, which refer to pairs of molecules that are structurally similar but show significant differences in their potency, can lead to model representation collapse and make the model challenging to distinguish them. Our research…

Computer Vision and Pattern Recognition · Computer Science 2024-09-20 Zhixiang Cheng , Hongxin Xiang , Pengsen Ma , Li Zeng , Xin Jin , Xixi Yang , Jianxin Lin , Yang Deng , Bosheng Song , Xinxin Feng , Changhui Deng , Xiangxiang Zeng

Interpretability research takes counterfactual theories of causality for granted. Most causal methods rely on counterfactual interventions to inputs or the activations of particular model components, followed by observations of the change…

Machine Learning · Computer Science 2024-07-08 Aaron Mueller

Molecular property prediction is crucial for drug discovery and materials science, yet existing approaches suffer from limited interpretability, poor cross-task generalization, and lack of chemical reasoning capabilities. Traditional…

Machine Learning · Computer Science 2025-10-20 Jiaxi Zhuang , Yaorui Shi , Jue Hou , Yunong He , Mingwei Ye , Mingjun Xu , Yuming Su , Linfeng Zhang , Ying Qian , Linfeng Zhang , Guolin Ke , Hengxing Cai

The currently dominating artificial intelligence and machine learning technology, neural networks, builds on inductive statistical learning. Neural networks of today are information processing systems void of understanding and reasoning…

Artificial Intelligence · Computer Science 2022-08-26 Lars Holmberg

Computational molecular design -- the endeavor to design molecules, with various missions, aided by machine learning and molecular dynamics approaches, has been widely applied to create valuable new molecular entities, from small molecule…

The ability to remove features from the input of machine learning models is very important to understand and interpret model predictions. However, this is non-trivial for vision models since masking out parts of the input image typically…

Computer Vision and Pattern Recognition · Computer Science 2023-10-31 Sriram Balasubramanian , Soheil Feizi

Explainable Artificial Intelligence has become a crucial area of research, aiming to demystify the decision-making processes of deep learning models. Among various explainability techniques, counterfactual explanations have been proven…

Machine Learning · Computer Science 2025-10-14 Flavio Giorgi , Matteo Silvestri , Cesare Campagnano , Fabrizio Silvestri , Gabriele Tolomei

Although machine learning has been successfully used to propose novel molecules that satisfy desired properties, it is still challenging to explore a large chemical space efficiently. In this paper, we present a conditional molecular design…

Machine Learning · Computer Science 2019-04-02 Seokho Kang , Kyunghyun Cho

Explainable recommendation systems leverage transparent reasoning to foster user trust and improve decision-making processes. Current approaches typically decouple recommendation generation from explanation creation, violating causal…

Artificial Intelligence · Computer Science 2025-03-12 Guanrong Li , Haolin Yang , Xinyu Liu , Zhen Wu , Xinyu Dai

Deep learning models are challenged by the distribution shift between the training data and test data. Recently, the large models pre-trained on diverse data have demonstrated unprecedented robustness to various distribution shifts.…

Computer Vision and Pattern Recognition · Computer Science 2023-04-04 Yao Xiao , Ziyi Tang , Pengxu Wei , Cong Liu , Liang Lin

We propose a fast, model agnostic method for finding interpretable counterfactual explanations of classifier predictions by using class prototypes. We show that class prototypes, obtained using either an encoder or through class specific…

Machine Learning · Computer Science 2020-02-19 Arnaud Van Looveren , Janis Klaise

Although artificial intelligence (AI) has made significant progress in understanding molecules in a wide range of fields, existing models generally acquire the single cognitive ability from the single molecular modality. Since the hierarchy…

Machine Learning · Computer Science 2022-09-14 Bing Su , Dazhao Du , Zhao Yang , Yujie Zhou , Jiangmeng Li , Anyi Rao , Hao Sun , Zhiwu Lu , Ji-Rong Wen

With the rising need of interpretable machine learning methods, there is a necessity for a rise in human effort to provide diverse explanations of the influencing factors of the model decisions. To improve the trust and transparency of…

Machine Learning · Computer Science 2024-02-05 Peiyu Li , Soukaina Filali Boubrahimi , Shah Muhammad Hamdi

Causal approaches to fairness have seen substantial recent interest, both from the machine learning community and from wider parties interested in ethical prediction algorithms. In no small part, this has been due to the fact that causal…

Machine Learning · Computer Science 2019-08-17 Niki Kilbertus , Philip J. Ball , Matt J. Kusner , Adrian Weller , Ricardo Silva
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