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A novel framework for designing the molecular structure of chemical compounds with a desired chemical property has recently been proposed. The framework infers a desired chemical graph by solving a mixed integer linear program (MILP) that…

Computational Engineering, Finance, and Science · Computer Science 2023-05-02 Jianshen Zhu , Naveed Ahmed Azam , Kazuya Haraguchi , Liang Zhao , Hiroshi Nagamochi , Tatsuya Akutsu

Explanation mechanisms from the field of Counterfactual Thinking are a widely-used paradigm for Explainable Artificial Intelligence (XAI), as they follow a natural way of reasoning that humans are familiar with. However, all common…

Artificial Intelligence · Computer Science 2022-07-20 Silvan Mertes , Christina Karle , Tobias Huber , Katharina Weitz , Ruben Schlagowski , Elisabeth André

Data-driven methods that detect anomalies in times series data are ubiquitous in practice, but they are in general unable to provide helpful explanations for the predictions they make. In this work we propose a model-agnostic algorithm that…

Explainability is widely regarded as essential for trustworthy artificial intelligence systems. However, the metrics commonly used to evaluate counterfactual explanations are algorithmic evaluation metrics that are rarely validated against…

Artificial Intelligence · Computer Science 2026-03-17 Felix Liedeker , Basil Ell , Philipp Cimiano , Christoph Düsing

Visual counterfactual explanations are ideal hypothetical images that change the decision-making of the classifier with high confidence toward the desired class while remaining visually plausible and close to the initial image. In this…

Computer Vision and Pattern Recognition · Computer Science 2025-04-15 Tung Luu , Nam Le , Duc Le , Bac Le

Counterfactuals operationalised through algorithmic recourse have become a powerful tool to make artificial intelligence systems explainable. Conceptually, given an individual classified as y -- the factual -- we seek actions such that…

Machine learning models increasingly influence decisions in high-stakes settings such as finance, law and hiring, driving the need for transparent, interpretable outcomes. However, while explainable approaches can help understand the…

Artificial Intelligence · Computer Science 2025-08-26 Sopam Dasgupta , Sadaf MD Halim , Joaquín Arias , Elmer Salazar , Gopal Gupta

This paper addresses a significant gap in explainable AI: the necessity of interpreting epistemic uncertainty in model explanations. Although current methods mainly focus on explaining predictions, with some including uncertainty, they fail…

Artificial Intelligence · Computer Science 2024-10-10 Helena Löfström , Tuwe Löfström , Johan Hallberg Szabadvary

Counterfactual inference is a useful tool for comparing outcomes of interventions on complex systems. It requires us to represent the system in form of a structural causal model, complete with a causal diagram, probabilistic assumptions on…

Attribute reconstruction is used to predict node or edge features in the pre-training of graph neural networks. Given a large number of molecules, they learn to capture structural knowledge, which is transferable for various downstream…

Machine Learning · Computer Science 2025-01-27 Eric Inae , Gang Liu , Meng Jiang

While machine learning models have achieved unprecedented success in real-world applications, they might make biased/unfair decisions for specific demographic groups and hence result in discriminative outcomes. Although research efforts…

Machine Learning · Computer Science 2022-12-08 Yuying Zhao , Yu Wang , Tyler Derr

Counterfactual reasoning aims at answering contrary-to-fact questions like ``Would have Alice recovered had she taken aspirin?'' and corresponds to the most fine-grained layer of causation. Critically, while many counterfactual statements…

Artificial Intelligence · Computer Science 2025-09-23 Lucas de Lara

Feature construction can contribute to comprehensibility and performance of machine learning models. Unfortunately, it usually requires exhaustive search in the attribute space or time-consuming human involvement to generate meaningful…

Machine Learning · Computer Science 2023-01-24 Boštjan Vouk , Matej Guid , Marko Robnik-Šikonja

Machine learning (ML) models play an increasingly prevalent role in many software engineering tasks. However, because most models are now powered by opaque deep neural networks, it can be difficult for developers to understand why the model…

Software Engineering · Computer Science 2021-11-11 Jürgen Cito , Isil Dillig , Vijayaraghavan Murali , Satish Chandra

As the deep learning revolution marches on, self-supervised learning has garnered increasing attention in recent years thanks to its remarkable representation learning ability and the low dependence on labeled data. Among these varied…

Computer Vision and Pattern Recognition · Computer Science 2024-01-10 Siyuan Li , Luyuan Zhang , Zedong Wang , Di Wu , Lirong Wu , Zicheng Liu , Jun Xia , Cheng Tan , Yang Liu , Baigui Sun , Stan Z. Li

Deep learning-based molecular generation models have shown great potential in efficiently exploring vast chemical spaces by generating potential drug candidates with desired properties. However, these models often produce chemically invalid…

Machine Learning · Computer Science 2025-11-19 Jun-Hyoung Park , Ho-Jun Song , Seong-Whan Lee

Machine-learning models in chemistry - when based on descriptors of atoms embedded within molecules - face essential challenges in transferring the quality of predictions of local electronic structures and their associated properties across…

Chemical Physics · Physics 2024-09-27 Frederik Ø. Kjeldal , Janus J. Eriksen

In the wake of responsible AI, interpretability methods, which attempt to provide an explanation for the predictions of neural models have seen rapid progress. In this work, we are concerned with explanations that are applicable to natural…

Computation and Language · Computer Science 2023-05-29 Giorgos Filandrianos , Edmund Dervakos , Orfeas Menis-Mastromichalakis , Chrysoula Zerva , Giorgos Stamou

Empirical models of demand for differentiated products rely on low-dimensional product representations to capture substitution patterns. These representations are increasingly proxied by applying ML methods to high-dimensional, unstructured…

Econometrics · Economics 2026-01-12 Timothy Christensen , Giovanni Compiani

Existing tools for explaining complex models and systems are associational rather than causal and do not provide mechanistic understanding. We propose a new notion called counterfactual explainability for causal attribution that is…

Machine Learning · Statistics 2025-10-07 Zijun Gao , Qingyuan Zhao