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In Pattern Matching with Weighted Edits (PMWED), we are given a pattern $P$ of length $m$, a text $T$ of length $n$, a positive threshold $k$, and oracle access to a weight function that specifies the costs of edits (depending on the…

Data Structures and Algorithms · Computer Science 2025-10-21 Panagiotis Charalampopoulos , Tomasz Kociumaka , Philip Wellnitz

Archival information systems in government agency is one of the most used applications for daily acitivities. One feature in application management information document is searching. This feature serves to search for documents from a…

Computers and Society · Computer Science 2016-06-27 Pratiwi Vidyarsih , Leon Andretti Abdillah , Ari Muzakir

We present automatically parameterised Fully Homomorphic Encryption (FHE) for encrypted neural network inference and exemplify our inference over FHE compatible neural networks with our own open-source framework and reproducible examples.…

Machine Learning · Computer Science 2022-10-19 George Onoufriou , Marc Hanheide , Georgios Leontidis

We propose a fast algorithm for the calculation of the Wasserstein-1 distance, which is a particular type of optimal transport distance with homogeneous of degree one transport cost. Our algorithm is built on multilevel primal-dual…

Computation · Statistics 2019-08-06 Jialin Liu , Wotao Yin , Wuchen Li , Yat Tin Chow

Estimating the difference between quantum data is crucial in quantum computing. However, as typical characterizations of quantum data similarity, the trace distance and quantum fidelity are believed to be exponentially-hard to evaluate in…

Quantum Physics · Physics 2021-12-28 Ranyiliu Chen , Zhixin Song , Xuanqiang Zhao , Xin Wang

In this paper, we present a novel interpretation of the so-called Weisfeiler-Lehman (WL) distance, introduced by Chen et al. (2022), using concepts from stochastic processes. The WL distance aims at comparing graphs with node features, has…

Machine Learning · Computer Science 2023-10-03 Samantha Chen , Sunhyuk Lim , Facundo Mémoli , Zhengchao Wan , Yusu Wang

The Optimal Transport (a.k.a. Wasserstein) distance is an increasingly popular similarity measure for rich data domains, such as images or text documents. This raises the necessity for fast nearest neighbor search algorithms according to…

Data Structures and Algorithms · Computer Science 2020-09-30 Arturs Backurs , Yihe Dong , Piotr Indyk , Ilya Razenshteyn , Tal Wagner

Fully Homomorphic Encryption (FHE) is a cryptographic method that guarantees the privacy and security of user data during computation. FHE algorithms can perform unlimited arithmetic computations directly on encrypted data without…

Cryptography and Security · Computer Science 2023-06-21 Charles Gouert , Vinu Joseph , Steven Dalton , Cedric Augonnet , Michael Garland , Nektarios Georgios Tsoutsos

The proliferation of high-throughput sequencing machines ensures rapid generation of up to billions of short nucleotide fragments in a short period of time. This massive amount of sequence data can quickly overwhelm today's storage and…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-11-13 Subho S. Banerjee , Mohamed El-Hadedy , Jong Bin Lim , Zbigniew T. Kalbarczyk , Deming Chen , Steve Lumetta , Ravishankar K. Iyer

Fully Homomorphic Encryption (FHE) allows computations to be performed directly on encrypted data without needing to decrypt it first. This "encryption-in-use" feature is crucial for securely outsourcing computations in privacy-sensitive…

Cryptography and Security · Computer Science 2024-10-22 Muhammad Husni Santriaji , Jiaqi Xue , Qian Lou , Yan Solihin

Audio and speech data are increasingly used in machine learning applications such as speech recognition, speaker identification, and mental health monitoring. However, the passive collection of this data by audio listening devices raises…

Audio and Speech Processing · Electrical Eng. & Systems 2025-05-16 Tu Duyen Nguyen , Adrien Lesage , Clotilde Cantini , Rachid Riad

The Damerau-Levenshtein distance between two sequences is the minimum number of operations (deletions, insertions, substitutions, and adjacent transpositions) required to convert one sequence into another. Notwithstanding a long history of…

Information Theory · Computer Science 2025-07-08 Zuo Ye , Gennian Ge

We present an algorithm for approximating the edit distance $\operatorname{ed}(x, y)$ between two strings $x$ and $y$ in time parameterized by the degree to which one of the strings $x$ satisfies a natural pseudorandomness property. The…

Data Structures and Algorithms · Computer Science 2018-11-13 William Kuszmaul

The migration of computation to the cloud has raised concerns regarding the security and privacy of sensitive data, as their need to be decrypted before processing, renders them susceptible to potential breaches. Fully Homomorphic…

Graph similarity search is a common and fundamental operation in graph databases. One of the most popular graph similarity measures is the Graph Edit Distance (GED) mainly because of its broad applicability and high interpretability.…

Databases · Computer Science 2018-01-25 Zijian Li , Xun Jian , Xiang Lian , Lei Chen

This paper presents an algorithm for the efficient approximation of the saddle-extremum persistence diagram of a scalar field. Vidal et al. introduced recently a fast algorithm for such an approximation (by interrupting a progressive…

Graphics · Computer Science 2021-08-13 Jules Vidal , Julien Tierny

Homomorphic encryption (HE) is pivotal for secure computation on encrypted data, crucial in privacy-preserving data analysis. However, efficiently processing high-dimensional data in HE, especially for machine learning and statistical…

Cryptography and Security · Computer Science 2024-06-17 Joon Soo Yoo , Baek Kyung Song , Tae Min Ahn , Ji Won Heo , Ji Won Yoon

Graph edit distance (GED) is a powerful and flexible graph matching paradigm that can be used to address different tasks in structural pattern recognition, machine learning, and data mining. In this paper, some new binary linear programming…

Data Structures and Algorithms · Computer Science 2015-05-22 Julien Lerouge , Zeina Abu-Aisheh , Romain Raveaux , Pierre Héroux , Sébastien Adam

Graph edit distance (GED) is an important similarity measure adopted in a similarity-based analysis between two graphs, and computing GED is a primitive operator in graph database analysis. Partially due to the NP-hardness, the existing…

Databases · Computer Science 2017-10-03 Lijun Chang , Xing Feng , Xuemin Lin , Lu Qin , Wenjie Zhang

Recently, DNA storage has surfaced as a promising alternative for data storage, presenting notable benefits in terms of storage capacity, cost-effectiveness in maintenance, and the capability for parallel replication. Mathematically, the…

Information Theory · Computer Science 2024-01-31 Yi Lu , Yun Ma , Chenghao Li , Xin Zhang , Guangxiang Si
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