English
Related papers

Related papers: TrajLens: Visual Analysis for Constructing Cell De…

200 papers

Over the last decade, Convolutional Neural Networks (CNN) saw a tremendous surge in performance. However, understanding what a network has learned still proves to be a challenging task. To remedy this unsatisfactory situation, a number of…

Computer Vision and Pattern Recognition · Computer Science 2024-05-01 Felix Grün , Christian Rupprecht , Nassir Navab , Federico Tombari

Vision-Language-Action models have demonstrated remarkable capabilities in predicting agent movements within virtual environments and real-world scenarios based on visual observations and textual instructions. Although recent research has…

Computer Vision and Pattern Recognition · Computer Science 2025-08-13 Maxim A. Patratskiy , Alexey K. Kovalev , Aleksandr I. Panov

The ability to measure the transcriptomes of single cells has only been feasible for a few years, and is becoming an extremely popular assay. While many types of analysis and questions can be answered using single cell RNA-sequencing, a…

Genomics · Quantitative Biology 2017-08-09 Valentine Svensson , Roser Vento-Tormo , Sarah A Teichmann

Egocentric networks, often visualized as node-link diagrams, portray the complex relationship (link) dynamics between an entity (node) and others. However, common analytics tasks are multifaceted, encompassing interactions among four key…

Human-Computer Interaction · Computer Science 2025-03-07 Yun-Hsin Kuo , Dongyu Liu , Kwan-Liu Ma

We study how vision-language models (VLMs) trained on web-scale data can be integrated into end-to-end driving systems to boost generalization and enable interactivity with human users. While recent approaches adapt VLMs to driving via…

Computer Vision and Pattern Recognition · Computer Science 2025-01-17 Chonghao Sima , Katrin Renz , Kashyap Chitta , Li Chen , Hanxue Zhang , Chengen Xie , Jens Beißwenger , Ping Luo , Andreas Geiger , Hongyang Li

Exponential growth in the quantity of digital news, social media, and other textual sources makes it difficult for humans to keep up with rapidly evolving narratives about world events. Various visualisation techniques have been touted to…

Human-Computer Interaction · Computer Science 2026-03-04 Songhai Fan , Simon Angus , Tim Dwyer , Ying Yang , Sarah Goodwin , Helen Purchase

The current paper proposes a novel predictive coding type neural network model, the predictive multiple spatio-temporal scales recurrent neural network (P-MSTRNN). The P-MSTRNN learns to predict visually perceived human whole-body cyclic…

Computer Vision and Pattern Recognition · Computer Science 2017-09-07 Minkyu Choi , Jun Tani

We present a general computational theory of stem cell networks and their developmental dynamics. Stem cell networks are special cases of developmental control networks. Our theory generates a natural classification of all possible stem…

Other Quantitative Biology · Quantitative Biology 2016-07-18 Eric Werner

In genome-scale constraint-based metabolic models, gene deletion strategies are essential for achieving growth-coupled production, where cell growth and target metabolite synthesis occur simultaneously. Despite the inherently networked…

Quantitative Methods · Quantitative Biology 2026-04-10 Ziwei Yang , Takeyuki Tamura

The explosive growth of large language models (LLMs) has created a vast but opaque landscape: millions of models exist, yet their evolutionary relationships through fine-tuning, distillation, or adaptation are often undocumented or unclear,…

Machine Learning · Computer Science 2026-05-04 Zhaomin Wu , Haodong Zhao , Ziyang Wang , Jizhou Guo , Qian Wang , Bingsheng He

As deep neural networks are increasingly used in solving high-stake problems, there is a pressing need to understand their internal decision mechanisms. Visualization has helped address this problem by assisting with interpreting complex…

Machine Learning · Computer Science 2019-06-04 Haekyu Park , Fred Hohman , Duen Horng Chau

Higher-order patterns reveal sequential multistep state transitions, which are usually superior to origin-destination analysis, which depicts only first-order geospatial movement patterns. Conventional methods for higher-order movement…

Human-Computer Interaction · Computer Science 2024-03-07 Zezheng Feng , Fang Zhu , Hongjun Wang , Jianing Hao , ShuangHua Yang , Wei Zeng , Huamin Qu

Cell segmentation and tracking in microscopy images are of great significance to new discoveries in biology and medicine. In this study, we propose a novel approach to combine cell segmentation and cell tracking into a unified end-to-end…

Computer Vision and Pattern Recognition · Computer Science 2021-02-23 Yuqian Chen , Yang Song , Chaoyi Zhang , Fan Zhang , Lauren O'Donnell , Wojciech Chrzanowski , Weidong Cai

Systems Biology has emerged in the last years as a new holistic approach based on the global understanding of cells instead of only being focused on their individual parts (genes or proteins), to better understand the complexity of human…

Single-cell analysis is currently one of the most high-resolution techniques to study biology. The large complex datasets that have been generated have spurred numerous developments in computational biology, in particular the use of…

Genomics · Quantitative Biology 2023-04-27 Ionut Sebastian Mihai , Sarang Chafle , Johan Henriksson

Modern spatial microscopy has provided developmental biology with powerful research tools. However, the recent significant technological breakthroughs have inevitably led to technical "bottlenecks" for the application of the new procedures…

Quantitative Methods · Quantitative Biology 2012-05-02 Ivan V. Rudskiy , Nadejda V. Khodorova

We present ParcoursVis, an open-source Progressive Visual Analytics tool designed to explore aggregated electronic health record sequences of patients at scale. Existing tools are limited to about 20k patients that they can process fast…

Human-Computer Interaction · Computer Science 2025-09-23 Ambre Assor , Mickael Sereno , Jean-Daniel Fekete

Natural environments such as forests and grasslands are challenging for robotic navigation because of the false perception of rigid obstacles from high grass, twigs, or bushes. In this work, we present Wild Visual Navigation (WVN), an…

Trajectory generation has recently drawn growing interest in privacy-preserving urban mobility studies and location-based service applications. Although many studies have used deep learning or generative AI methods to model trajectories and…

Machine Learning · Computer Science 2026-03-25 Yuanbo Tang , Yan Tang , Zixuan Zhang , Zihui Zhao , Yang Li