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Related papers: Code Clone Detection via an AlphaFold-Inspired Fra…

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Code completion, which aims to predict the following code token(s) according to the code context, can improve the productivity of software development. Recent work has proved that statistical language modeling with transformers can greatly…

Software Engineering · Computer Science 2022-03-16 Shuai Lu , Nan Duan , Hojae Han , Daya Guo , Seung-won Hwang , Alexey Svyatkovskiy

The dominant approach to generating from language models subject to some constraint is locally constrained decoding (LCD), incrementally sampling tokens at each time step such that the constraint is never violated. Typically, this is…

Detecting similar code fragments, usually referred to as code clones, is an important task. In particular, code clone detection can have significant uses in the context of vulnerability discovery, refactoring and plagiarism detection.…

Software Engineering · Computer Science 2021-05-26 Hongfa Xue , Yongsheng Mei , Kailash Gogineni , Guru Venkataramani , Tian Lan

Protein structure prediction helps to understand gene translation and protein function, which is of growing interest and importance in structural biology. The AlphaFold model, which used transformer architecture to achieve atomic-level…

Machine Learning · Computer Science 2023-02-07 Shenggan Cheng , Xuanlei Zhao , Guangyang Lu , Jiarui Fang , Zhongming Yu , Tian Zheng , Ruidong Wu , Xiwen Zhang , Jian Peng , Yang You

Code search is a core software engineering task. Effective code search tools can help developers substantially improve their software development efficiency and effectiveness. In recent years, many code search studies have leveraged…

Software Engineering · Computer Science 2021-10-12 Chao Liu , Xin Xia , David Lo , Cuiyun Gao , Xiaohu Yang , John Grundy

The Large Language Models (LLMs) have demonstrated great potential in code-related tasks. However, most research focuses on improving the output quality of LLMs (e.g., correctness), and less attention has been paid to the LLM input (e.g.,…

Software Engineering · Computer Science 2025-08-19 Zhipeng Xue , Xiaoting Zhang , Zhipeng Gao , Xing Hu , Shan Gao , Xin Xia , Shanping Li

While DeepMind has tentatively solved protein folding, its inverse problem -- protein design which predicts protein sequences from their 3D structures -- still faces significant challenges. Particularly, the lack of large-scale standardized…

Quantitative Methods · Quantitative Biology 2022-02-15 Zhangyang Gao , Cheng Tan , Stan Z. Li

Given two algorithms for the same problem, can we determine whether they are meaningfully different? In full generality, the question is uncomputable, and empirically it is muddied by competing notions of similarity. Yet, in many…

Machine Learning · Computer Science 2025-11-03 Shairoz Sohail , Taher Ali

This study aims to assess the performance of two advanced Large Language Models (LLMs), GPT-3.5 and GPT-4, in the task of code clone detection. The evaluation involves testing the models on a variety of code pairs of different clone types…

Software Engineering · Computer Science 2024-07-03 Zixian Zhang , Takfarinas Saber

Predicting the runtime complexity of a programming code is an arduous task. In fact, even for humans, it requires a subtle analysis and comprehensive knowledge of algorithms to predict time complexity with high fidelity, given any code. As…

Machine Learning · Computer Science 2019-11-05 Jagriti Sikka , Kushal Satya , Yaman Kumar , Shagun Uppal , Rajiv Ratn Shah , Roger Zimmermann

Detecting Large Language Model (LLM)-generated code is a growing challenge with implications for security, intellectual property, and academic integrity. We investigate the role of conditional probability distributions in improving…

Computation and Language · Computer Science 2025-06-09 Maor Ashkenazi , Ofir Brenner , Tal Furman Shohet , Eran Treister

Reusing code can produce duplicate or near-duplicate code clones in code repositories. Current code clone detection techniques, like Program Dependence Graphs, rely on code structure and their dependencies to detect clones. These techniques…

Software Engineering · Computer Science 2020-06-26 Sandeep Kaur Kuttal , Akash Ghosh

The recent progress of artificial intelligence(AI) has shown great potentials for alleviating human burden in various complex tasks. From the view of software engineering, AI techniques can be seen in many fundamental aspects of…

Software Engineering · Computer Science 2021-03-02 Wenhe Zhang , Jin He , Kevin Song

Data contamination is a known threat to the reliability of model evaluation. However, it remains underexplored in code large language models (LLMs), where contamination often goes beyond exact duplication. We present TRACER, a…

Software Engineering · Computer Science 2026-05-26 Yifeng Di , Xuliang Huang , Tianyi Zhang

Regression test case prioritization (RTCP) aims to improve the rate of fault detection by executing more important test cases as early as possible. Various RTCP techniques have been proposed based on different coverage criteria. Among them,…

Software Engineering · Computer Science 2020-07-02 Rubing Huang , Quanjun Zhang , Dave Towey , Weifeng Sun , Jinfu Chen

Unlike the flow structure of natural languages, programming languages have an inherent rigidity in structure and grammar.However, existing detection methods based on pre-trained models typically treat code as a natural language sequence,…

Software Engineering · Computer Science 2024-11-11 Ziliang Wang , Ge Li , Jia Li , Yihong Dong , Yingfei Xiong , Zhi Jin

Anomaly detection based on system logs plays an important role in intelligent operations, which is a challenging task due to the extremely complex log patterns. Existing methods detect anomalies by capturing the sequential dependencies in…

Machine Learning · Computer Science 2023-07-10 Ling Chen , Chaodu Song , Xu Wang , Dachao Fu , Feifei Li

Code translation transforms programs from one programming language (PL) to another. Several rule-based transpilers have been designed to automate code translation between different pairs of PLs. However, the rules can become obsolete as the…

Software Engineering · Computer Science 2025-06-23 Ali Reza Ibrahimzada , Kaiyao Ke , Mrigank Pawagi , Muhammad Salman Abid , Rangeet Pan , Saurabh Sinha , Reyhaneh Jabbarvand

AlphaFold2 has been hailed as a breakthrough in protein folding. It can rapidly predict protein structures with lab-grade accuracy. However, its implementation does not include the necessary training code. OpenFold is the first trainable…

Classic clone detection approaches are hardly capable of finding redundant code that has been developed independently, i.e., is not the result of copy&paste. To automatically detect such functionally similar code of independent origin, we…

Software Engineering · Computer Science 2018-01-19 Florian Deissenboeck , Lars Heinemann , Benjamin Hummel , Stefan Wagner