Related papers: NDAI-NeuroMAP: A Neuroscience-Specific Embedding M…
Text embedding representing natural language documents in a semantic vector space can be used for document retrieval using nearest neighbor lookup. In order to study the feasibility of neural models specialized for retrieval in a…
Obtaining large pre-trained models that can be fine-tuned to new tasks with limited annotated samples has remained an open challenge for medical imaging data. While pre-trained deep networks on ImageNet and vision-language foundation models…
Large language models record impressive performance on many natural language processing tasks. However, their knowledge capacity is limited to the pretraining corpus. Retrieval augmentation offers an effective solution by retrieving context…
NeuroNet is a deep convolutional neural network mimicking multiple popular and state-of-the-art brain segmentation tools including FSL, SPM, and MALPEM. The network is trained on 5,000 T1-weighted brain MRI scans from the UK Biobank Imaging…
In this study, we present an interpretable deep learning framework for the early detection of breast cancer using quantitative features extracted from digitized fine needle aspirate (FNA) images of breast masses. Our deep neural network,…
Retrieving case law is a time-consuming task predominantly carried out by querying databases. We provide a comparison of two models in three different settings for Czech Constitutional Court decisions: (i) a large general-purpose embedder…
Recently, neural models for information retrieval are becoming increasingly popular. They provide effective approaches for product search due to their competitive advantages in semantic matching. However, it is challenging to use…
The intersection of computer vision and machine learning has emerged as a promising avenue for advancing historical research, facilitating a more profound exploration of our past. However, the application of machine learning approaches in…
The audio watermarking technique embeds messages into audio and accurately extracts messages from the watermarked audio. Traditional methods develop algorithms based on expert experience to embed watermarks into the time-domain or…
Epilepsy affects around 50 million people globally. Electroencephalography (EEG) or Magnetoencephalography (MEG) based spike detection plays a crucial role in diagnosis and treatment. Manual spike identification is time-consuming and…
$k$-Nearest Neighbor search on dense vector embeddings ($k$-NN retrieval) from pre-trained embedding models is the predominant retrieval method for text and images, as well as Retrieval-Augmented Generation (RAG) pipelines. In practice,…
Despite advances in generative large language models (LLMs), practical application of specialized conversational AI agents remains constrained by computation costs, latency requirements, and the need for precise domain-specific relevance…
Attribution in large language models (LLMs) remains a significant challenge, particularly in ensuring the factual accuracy and reliability of the generated outputs. Current methods for citation or attribution, such as those employed by…
Understanding cell identity and function through single-cell level sequencing data remains a key challenge in computational biology. We present a novel framework that leverages gene-specific textual annotations from the NCBI Gene database…
We propose a novel deep neural network architecture to integrate imaging and genetics data, as guided by diagnosis, that provides interpretable biomarkers. Our model consists of an encoder, a decoder and a classifier. The encoder learns a…
Nowadays, with the development of public network usage, medical information is transmitted throughout the hospitals. The watermarking system can help for the confidentiality of medical information distributed over the internet. In medical…
Recent advance in Dense Retrieval (DR) techniques has significantly improved the effectiveness of first-stage retrieval. Trained with large-scale supervised data, DR models can encode queries and documents into a low-dimensional dense space…
Understanding and solving complex reasoning tasks is vital for addressing the information needs of a user. Although dense neural models learn contextualised embeddings, they still underperform on queries containing negation. To understand…
Discovering distinct features and their relations from data can help us uncover valuable knowledge crucial for various tasks, e.g., classification. In neuroimaging, these features could help to understand, classify, and possibly prevent…
Diffusion magnetic resonance imaging (dMRI) provides a unique tool for noninvasively probing the microstructure of the neuronal tissue. The NODDI model has been a popular approach to the estimation of tissue microstructure in many…