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Related papers: NDAI-NeuroMAP: A Neuroscience-Specific Embedding M…

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Deep Research Agents (DRAs) generate citation-rich reports via multi-step search and synthesis, yet existing benchmarks mainly target text-only settings or short-form multimodal QA, missing end-to-end multimodal evidence use. We introduce…

Computer Vision and Pattern Recognition · Computer Science 2026-01-21 Peizhou Huang , Zixuan Zhong , Zhongwei Wan , Donghao Zhou , Samiul Alam , Xin Wang , Zexin Li , Zhihao Dou , Li Zhu , Jing Xiong , Chaofan Tao , Yan Xu , Dimitrios Dimitriadis , Tuo Zhang , Mi Zhang

The surging amount of biomedical literature & digital clinical records presents a growing need for text mining techniques that can not only identify but also semantically relate entities in unstructured data. In this paper we propose a text…

Computation and Language · Computer Science 2021-12-28 Hasham Ul Haq , Veysel Kocaman , David Talby

Cybersecurity demands both rapid pattern recognition and deliberative reasoning, yet purely neural or purely symbolic approaches each address only one side of this duality. Neuro-Symbolic (NeSy) AI bridges this gap by integrating learning…

Cryptography and Security · Computer Science 2026-04-16 Safayat Bin Hakim , Muhammad Adil , Alvaro Velasquez , Shouhuai Xu , Houbing Herbert Song

Discovering novel classes in open-world settings is crucial for real-world applications. Traditional explicit representations, such as object descriptors or 3D segmentation maps, are constrained by their discrete, hole-prone, and noisy…

Machine Learning · Computer Science 2025-06-10 Junming Wang , Yi Shi

Named entity recognition (NER) is one of the best studied tasks in natural language processing. However, most approaches are not capable of handling nested structures which are common in many applications. In this paper we introduce a novel…

Computation and Language · Computer Science 2019-08-12 Joseph Fisher , Andreas Vlachos

Network embedding methodologies, which learn a distributed vector representation for each vertex in a network, have attracted considerable interest in recent years. Existing works have demonstrated that vertex representation learned through…

Machine Learning · Computer Science 2018-08-22 Vachik S. Dave , Baichuan Zhang , Pin-Yu Chen , Mohammad Al Hasan

The differential diagnosis of neurodegenerative dementias is a challenging clinical task, mainly because of the overlap in symptom presentation and the similarity of patterns observed in structural neuroimaging. To improve diagnostic…

Machine Learning · Computer Science 2025-05-27 Andrew Zamai , Nathanael Fijalkow , Boris Mansencal , Laurent Simon , Eloi Navet , Pierrick Coupe

The increasing complexity and frequency of cyber-threats demand intrusion detection systems (IDS) that are not only accurate but also interpretable. This paper presented a novel IDS framework that integrated Explainable Artificial…

In the contemporary big data realm, Deep Neural Networks (DNNs) are evolving towards more complex architectures to achieve higher inference accuracy. Model compression techniques can be leveraged to efficiently deploy such compute-intensive…

Machine Learning · Computer Science 2020-04-15 Mojan Javaheripi , Mohammad Samragh , Tara Javidi , Farinaz Koushanfar

Neural ranking models (NRMs) and dense retrieval (DR) models have given rise to substantial improvements in overall retrieval performance. In addition to their effectiveness, and motivated by the proven lack of robustness of deep…

Information Retrieval · Computer Science 2023-08-22 Yu-An Liu , Ruqing Zhang , Jiafeng Guo , Maarten de Rijke , Wei Chen , Yixing Fan , Xueqi Cheng

We present our ongoing work NeuroMapper, an in-browser visualization tool that helps machine learning (ML) developers interpret the evolution of a model during training, providing a new way to monitor the training process and visually…

Human-Computer Interaction · Computer Science 2022-10-25 Zhiyan Zhou , Kevin Li , Haekyu Park , Megan Dass , Austin Wright , Nilaksh Das , Duen Horng Chau

Resting-state functional magnetic resonance imaging (rs-fMRI) is a noninvasive technique pivotal for understanding human neural mechanisms of intricate cognitive processes. Most rs-fMRI studies compute a single static functional…

Neurons and Cognition · Quantitative Biology 2025-02-25 Bishal Thapaliya , Robyn Miller , Jiayu Chen , Yu-Ping Wang , Esra Akbas , Ram Sapkota , Bhaskar Ray , Pranav Suresh , Santosh Ghimire , Vince Calhoun , Jingyu Liu

With the increasing number of new neural architecture designs and substantial existing neural architectures, it becomes difficult for the researchers to situate their contributions compared with existing neural architectures or establish…

Artificial Intelligence · Computer Science 2024-03-19 Xiaohuan Pei , Yanxi Li , Minjing Dong , Chang Xu

This paper presents a comprehensive and quality collection of functional human brain network data for potential research in the intersection of neuroscience, machine learning, and graph analytics. Anatomical and functional MRI images have…

Graph neural networks are increasingly applied to multimodal medical diagnosis for their inherent relational modeling capabilities. However, their efficacy is often compromised by the prevailing reliance on a single, static graph built from…

Computer Vision and Pattern Recognition · Computer Science 2025-12-24 Ziwei Qin , Xuhui Song , Deqing Huang , Na Qin , Jun Li

Knowledge representation and reasoning are critical challenges in Artificial Intelligence (AI), particularly in integrating neural and symbolic approaches to achieve explainable and transparent AI systems. Traditional knowledge…

Computation and Language · Computer Science 2025-02-17 Xin Kang , Veronika Shteingardt , Yuhan Wang , Dov Dori

Modern retrieval-augmented generation (RAG) systems treat vector embeddings as static, context-free artifacts: an embedding has no notion of when it was created, how trustworthy its source is, or which other embeddings depend on it. This…

Information Retrieval · Computer Science 2026-04-23 Naizhong Xu

Objective: The majority of detailed patient information in real-world data (RWD) is only consistently available in free-text clinical documents. Manual curation is expensive and time-consuming. Developing natural language processing (NLP)…

Recommendation problems with large numbers of discrete items, such as products, webpages, or videos, are ubiquitous in the technology industry. Deep neural networks are being increasingly used for these recommendation problems. These models…

Machine Learning · Computer Science 2019-07-11 Manas R. Joglekar , Cong Li , Jay K. Adams , Pranav Khaitan , Quoc V. Le

Network topology excels at structural predictions but fails to capture functional semantics encoded in biomedical literature. We present RAG-GNN, an end-to-end trainable retrieval-augmented graph neural network framework that integrates GNN…

Molecular Networks · Quantitative Biology 2026-05-14 Hasi Hays , William J. Richardson