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Accurate prediction of protein-ligand binding affinity is crucial for rapid and efficient drug development. Recently, the importance of predicting binding affinity has led to increased attention on research that models the three-dimensional…

Machine Learning · Computer Science 2024-07-17 Seungyeon Choi , Sangmin Seo , Sanghyun Park

The advent of large language models (LLMs) has revolutionized natural language processing, enabling unprecedented capabilities in understanding and generating human-like text. However, the computational cost and convergence times associated…

Computation and Language · Computer Science 2024-11-26 Kerim Büyükakyüz

Inspired by the recent success of the Mamba architecture in vision and language domains, we introduce a Unified Attention-Mamba (UAM) backbone. Unlike previous hybrid approaches that integrate Attention and Mamba modules in fixed…

Computer Vision and Pattern Recognition · Computer Science 2026-03-09 Taixi Chen , Jingyun Chen , Nancy Guo

Software vulnerabilities continue to be ubiquitous, even in the era of AI-powered code assistants, advanced static analysis tools, and the adoption of extensive testing frameworks. It has become apparent that we must not simply prevent…

In biomedical and neurodegenerative disorders, accurate and early disease identification remains challenging due to the scarcity of labeled data and the complexity of imaging patterns. To address these challenges, we introduce ARMA-C3, a…

Computer Vision and Pattern Recognition · Computer Science 2026-05-26 VSS Tejaswi Abburi , Saurabh J. Shigwan , Nitin Kumar

Understanding and quantifying human cognitive biases from empirical data has long posed a formidable challenge, particularly in cybersecurity, where defending against unknown adversaries is paramount. Traditional cyber defense strategies…

Cryptography and Security · Computer Science 2025-08-20 Soham Hans , Nikolos Gurney , Stacy Marsella , Sofia Hirschmann

Safety fine-tuning helps align Large Language Models (LLMs) with human preferences for their safe deployment. To better understand the underlying factors that make models safe via safety fine-tuning, we design a synthetic data generation…

Machine Learning · Computer Science 2024-08-22 Samyak Jain , Ekdeep Singh Lubana , Kemal Oksuz , Tom Joy , Philip H. S. Torr , Amartya Sanyal , Puneet K. Dokania

Determining the ideal architecture for deep learning models, such as the number of layers and neurons, is a difficult and resource-intensive process that frequently relies on human tuning or computationally costly optimization approaches.…

Artificial Intelligence · Computer Science 2025-04-22 Saad Hameed , Basheer Qolomany , Samir Brahim Belhaouari , Mohamed Abdallah , Junaid Qadir , Ala Al-Fuqaha

Large language models (LLMs) have demonstrated exceptional proficiency in understanding and generating human language, but efficient inference on resource-constrained embedded devices remains challenging due to large model sizes and…

Hardware Architecture · Computer Science 2025-07-15 Weihong Xu , Haein Choi , Po-kai Hsu , Shimeng Yu , Tajana Rosing

While automated vulnerability detection techniques have made promising progress in detecting security vulnerabilities, their scalability and applicability remain challenging. The remarkable performance of Large Language Models (LLMs), such…

Cryptography and Security · Computer Science 2024-10-24 Avishree Khare , Saikat Dutta , Ziyang Li , Alaia Solko-Breslin , Rajeev Alur , Mayur Naik

This paper presents a real-time modular defense system named Sentra-Guard. The system detects and mitigates jailbreak and prompt injection attacks targeting large language models (LLMs). The framework uses a hybrid architecture with…

Cryptography and Security · Computer Science 2026-05-04 Md. Mehedi Hasan , Sk Tanzir Mehedi , Ziaur Rahman , Rafid Mostafiz , Md. Abir Hossain

Open-weight models provide researchers and developers with accessible foundations for diverse downstream applications. We tested the safety and security postures of eight open-weight large language models (LLMs) to identify vulnerabilities…

Cryptography and Security · Computer Science 2025-11-06 Amy Chang , Nicholas Conley , Harish Santhanalakshmi Ganesan , Adam Swanda

The malware booming is a cyberspace equal to the effect of climate change to ecosystems in terms of danger. In the case of significant investments in cybersecurity technologies and staff training, the global community has become locked up…

Cryptography and Security · Computer Science 2024-05-08 Ishita Gupta , Sneha Kumari , Priya Jha , Mohona Ghosh

Large Language Models (LLMs) are being extensively used for cybersecurity purposes. One of them is the detection of vulnerable codes. For the sake of efficiency and effectiveness, compression and fine-tuning techniques are being developed,…

Cryptography and Security · Computer Science 2025-06-02 Luis Ibanez-Lissen , Lorena Gonzalez-Manzano , Jose Maria de Fuentes , Nicolas Anciaux

Unlocking the next generation of biotechnology and therapeutic innovation demands overcoming the inherent complexity and resource-intensity of conventional protein engineering methods. Recent GenAI-powered computational techniques often…

Large Language Model (LLM)-powered agents demonstrate strong capabilities in autonomous task execution, tool use, and multi-step reasoning. However, their increasing autonomy also introduces a new attack surface: adversarial interactions…

Artificial Intelligence · Computer Science 2026-05-05 Sheldon Yu , Yingcheng Sun , Hanqing Guo , Julian McAuley , Qianqian Tong

Alignment is a crucial step to enhance the instruction-following and conversational abilities of language models. Despite many recent work proposing new algorithms, datasets, and training pipelines, there is a lack of comprehensive studies…

Computation and Language · Computer Science 2024-10-04 Xiao Yu , Qingyang Wu , Yu Li , Zhou Yu

Large language models (LLMs) have significantly advanced protein representation learning. However, their capacity to interpret and design antibodies through natural language remains limited. To address this challenge, we present…

Quantitative Methods · Quantitative Biology 2026-05-21 Ling Luo , Wenbin Jiang , Hongyuan Chang , Xinkang Wang , Xushi Zhang , Yueting Xiong , Mengsha Tong , Rongshan Yu

Despite efforts to align large language models (LLMs) with human intentions, widely-used LLMs such as GPT, Llama, and Claude are susceptible to jailbreaking attacks, wherein an adversary fools a targeted LLM into generating objectionable…

Machine Learning · Computer Science 2024-06-17 Alexander Robey , Eric Wong , Hamed Hassani , George J. Pappas

Importance: Emergency department (ED) returns for mental health conditions pose a major healthcare burden, with 24-27% of patients returning within 30 days. Traditional machine learning models for predicting these returns often lack…