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Related papers: BioCube: A Multimodal Dataset for Biodiversity Res…

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Biodiversity is declining at an unprecedented rate, impacting ecosystem services necessary to ensure food, water, and human health and well-being. Understanding the distribution of species and their habitats is crucial for conservation…

In the past few decades, the life sciences have experienced an unprecedented accumulation of data, ranging from genomic sequences and proteomic profiles to heavy-content imaging, clinical assays, and commercial biological products for…

Databases · Computer Science 2025-09-22 Rosalia Moreddu

Accurate estimates of Above Ground Biomass (AGB) are essential in addressing two of humanity's biggest challenges: climate change and biodiversity loss. Existing datasets for AGB estimation from satellite imagery are limited. Either they…

Computer Vision and Pattern Recognition · Computer Science 2025-04-08 Ghjulia Sialelli , Torben Peters , Jan D. Wegner , Konrad Schindler

The BIOSCAN project, led by the International Barcode of Life Consortium, seeks to study changes in biodiversity on a global scale. One component of the project is focused on studying the species interaction and dynamics of all insects. In…

Computer Vision and Pattern Recognition · Computer Science 2022-11-07 Nicholas Pellegrino , Zahra Gharaee , Paul Fieguth

The innovative application of precise geospatial vegetation forecasting holds immense potential across diverse sectors, including agriculture, forestry, humanitarian aid, and carbon accounting. To leverage the vast availability of satellite…

Computer Vision and Pattern Recognition · Computer Science 2024-03-08 Vitus Benson , Claire Robin , Christian Requena-Mesa , Lazaro Alonso , Nuno Carvalhais , José Cortés , Zhihan Gao , Nora Linscheid , Mélanie Weynants , Markus Reichstein

Global tree species mapping using remote sensing data is vital for biodiversity monitoring, forest management, and ecological research. However, progress in this field has been constrained by the scarcity of large-scale, labeled datasets.…

Computer Vision and Pattern Recognition · Computer Science 2026-01-27 Yang Mu , Zhitong Xiong , Yi Wang , Muhammad Shahzad , Franz Essl , Holger Kreft , Mark van Kleunen , Xiao Xiang Zhu

This paper focuses on a core task in computational sustainability and statistical ecology: species distribution modeling (SDM). In SDM, the occurrence pattern of a species on a landscape is predicted by environmental features based on…

Machine Learning · Computer Science 2021-02-19 Eugene Seo , Rebecca A. Hutchinson , Xiao Fu , Chelsea Li , Tyler A. Hallman , John Kilbride , W. Douglas Robinson

We present CrypticBio, the largest publicly available multimodal dataset of visually confusing species, specifically curated to support the development of AI models in the context of biodiversity applications. Visually confusing or cryptic…

Multimedia · Computer Science 2025-05-22 Georgiana Manolache , Gerard Schouten , Joaquin Vanschoren

Recent technological advances and long-term data studies provide interaction data that can be modelled through dynamic networks, i.e a sequence of different snapshots of an evolving ecological network. Most often time is the parameter along…

Populations and Evolution · Quantitative Biology 2017-01-06 Vincent Miele , Catherine Matias

Modeling environmental ecosystems is essential for effective resource management, sustainable development, and understanding complex ecological processes. However, traditional methods frequently struggle with the inherent complexity,…

Machine Learning · Computer Science 2025-03-06 Runlong Yu , Shengyu Chen , Yiqun Xie , Xiaowei Jia

The difficulty of monitoring biodiversity at fine scales and over large areas limits ecological knowledge and conservation efforts. To fill this gap, Species Distribution Models (SDMs) predict species across space from spatially explicit…

Computer Vision and Pattern Recognition · Computer Science 2024-12-12 Lukas Picek , Christophe Botella , Maximilien Servajean , César Leblanc , Rémi Palard , Théo Larcher , Benjamin Deneu , Diego Marcos , Pierre Bonnet , Alexis Joly

In the global challenge of understanding and characterizing biodiversity, short species-specific genomic sequences known as DNA barcodes play a critical role, enabling fine-grained comparisons among organisms within the same kingdom of…

Recording the dynamics of unscripted human interactions in the wild is challenging due to the delicate trade-offs between several factors: participant privacy, ecological validity, data fidelity, and logistical overheads. To address these,…

Multimedia · Computer Science 2022-10-11 Chirag Raman , Jose Vargas-Quiros , Stephanie Tan , Ashraful Islam , Ekin Gedik , Hayley Hung

The global occurrence, scale, and frequency of wildfires pose significant threats to ecosystem services and human livelihoods. To effectively quantify and attribute the antecedent conditions for wildfires, a thorough understanding of Earth…

Computer Vision and Pattern Recognition · Computer Science 2023-12-25 Ilektra Karasante , Lazaro Alonso , Ioannis Prapas , Akanksha Ahuja , Nuno Carvalhais , Ioannis Papoutsis

It is increasingly recognized that the multiple and systemic impacts of Earth system change threaten the prosperity of society through altered land carbon dynamics, freshwater variability, biodiversity loss, and climate extremes. For…

Classification using multimodal data arises in many machine learning applications. It is crucial not only to model cross-modal relationship effectively but also to ensure robustness against loss of part of data or modalities. In this paper,…

Machine Learning · Computer Science 2019-04-22 Jun-Ho Choi , Jong-Seok Lee

Large-scale, volunteer-collected datasets of community-identified natural world imagery like iNaturalist have enabled marked performance gains for fine-grained visual classification of species using machine learning methods. However, such…

Computer Vision and Pattern Recognition · Computer Science 2025-05-05 Elena Sierra , Lauren E. Gillespie , Salim Soltani , Moises Exposito-Alonso , Teja Kattenborn

Increasing climate change and habitat loss are driving unprecedented shifts in species distributions. Conservation professionals urgently need timely, high-resolution predictions of biodiversity risks, especially in ecologically diverse…

Quantitative Methods · Quantitative Biology 2025-12-03 Hammed A. Akande , Abdulrauf A. Gidado

We make a case for "planetary computing" -- infrastructure to handle the ingestion, transformation, analysis and publication of global data products for furthering environmental science and enabling better informed policy-making. We draw on…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-06-04 Patrick Ferris , Michael Dales , Sadiq Jaffer , Amelia Holcomb , Eleanor Toye Scott , Thomas Swinfield , Alison Eyres , Andrew Balmford , David Coomes , Srinivasan Keshav , Anil Madhavapeddy

Global plant maps of plant traits, such as leaf nitrogen or plant height, are essential for understanding ecosystem processes, including the carbon and energy cycles of the Earth system. However, existing trait maps remain limited by the…