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Related papers: BioCube: A Multimodal Dataset for Biodiversity Res…

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Movement is a fundamental aspect of animal life and plays a crucial role in determining the structure of population dynamics, communities, ecosystems, and diversity. In recent years, the recording of animal movements via GPS collars, camera…

Digital Libraries · Computer Science 2020-05-29 Brendan Hoover , Gil Bohrer , Jerod Merkle , Jennifer A. Miller

A challenge in global change biology is to predict how species will respond to future environmental change and to manage these responses. To make such predictions and management actions robust to novel futures, we need to accurately…

Deep learning methods have proven to be a powerful tool in the analysis of large amounts of complex Earth observation data. However, while Earth observation data are multi-modal in most cases, only single or few modalities are typically…

Computer Vision and Pattern Recognition · Computer Science 2023-07-06 Michael Mommert , Nicolas Kesseli , Joëlle Hanna , Linus Scheibenreif , Damian Borth , Begüm Demir

In this paper, we present WildlifeDatasets (https://github.com/WildlifeDatasets/wildlife-datasets) - an open-source toolkit intended primarily for ecologists and computer-vision / machine-learning researchers. The WildlifeDatasets is…

Computer Vision and Pattern Recognition · Computer Science 2023-12-15 Vojtěch Čermák , Lukas Picek , Lukáš Adam , Kostas Papafitsoros

Ecosystems are governed by dynamic processes such as competition for resources, reproduction and dispersal. These shape their biodiversity and how the system responds to change. Current approaches to modelling ecosystems, especially plants,…

Quantitative Methods · Quantitative Biology 2023-03-15 Claire L. Harris , Neil Brummitt , Christina A. Cobbold , Richard Reeve

The difficulty to measure or predict species community composition at fine spatio-temporal resolution and over large spatial scales severely hampers our ability to understand species assemblages and take appropriate conservation measures.…

A new multimodal biometric database designed and acquired within the framework of the European BioSecure Network of Excellence is presented. It is comprised of more than 600 individuals acquired simultaneously in three scenarios: 1) over…

This paper describes GeoPl@ntNet, an interactive web application designed to make Essential Biodiversity Variables accessible and understandable to everyone through dynamic maps and fact sheets. Its core purpose is to allow users to explore…

Quantitative Methods · Quantitative Biology 2026-04-15 Lukas Picek , César Leblanc , Alexis Joly , Pierre Bonnet , Rémi Palard , Maximilien Servajean

Biogeographical regions (bioregions) reveal how different sets of species are spatially grouped and therefore are important units for conservation, historical biogeography, ecology and evolution. Several methods have been developed to…

Quantitative Methods · Quantitative Biology 2016-12-01 Daniel Edler , Thaís Guedes , Alexander Zizka , Martin Rosvall , Alexandre Antonelli

Plant traits such as leaf carbon content and leaf mass are essential variables in the study of biodiversity and climate change. However, conventional field sampling cannot feasibly cover trait variation at ecologically meaningful spatial…

Computer Vision and Pattern Recognition · Computer Science 2025-11-27 Eya Cherif , Arthur Ouaknine , Luke A. Brown , Phuong D. Dao , Kyle R. Kovach , Bing Lu , Daniel Mederer , Hannes Feilhauer , Teja Kattenborn , David Rolnick

The challenge of replicating research results has posed a significant impediment to the field of molecular biology. The advent of modern intelligent systems has led to notable progress in various domains. Consequently, we embarked on an…

Computer Vision and Pattern Recognition · Computer Science 2023-11-02 Jieming Cui , Ziren Gong , Baoxiong Jia , Siyuan Huang , Zilong Zheng , Jianzhu Ma , Yixin Zhu

Understanding the geographic distribution of species is a key concern in conservation. By pairing species occurrences with environmental features, researchers can model the relationship between an environment and the species which may be…

Computer Vision and Pattern Recognition · Computer Science 2020-04-10 Elijah Cole , Benjamin Deneu , Titouan Lorieul , Maximilien Servajean , Christophe Botella , Dan Morris , Nebojsa Jojic , Pierre Bonnet , Alexis Joly

This paper presents the AquaMonitor dataset, the first large computer vision dataset of aquatic invertebrates collected during routine environmental monitoring. While several large species identification datasets exist, they are rarely…

Computer Vision and Pattern Recognition · Computer Science 2025-05-29 Mikko Impiö , Philipp M. Rehsen , Tiina Laamanen , Arne J. Beermann , Florian Leese , Jenni Raitoharju

Understanding the spatio-temporal distribution of species is a cornerstone of ecology and conservation. By pairing species observations with geographic and environmental predictors, researchers can model the relationship between an…

Computer Vision and Pattern Recognition · Computer Science 2025-10-01 Christophe Botella , Benjamin Deneu , Diego Marcos , Maximilien Servajean , Theo Larcher , Cesar Leblanc , Joaquim Estopinan , Pierre Bonnet , Alexis Joly

Terrestrial carbon fluxes provide vital information about our biosphere's health and its capacity to absorb anthropogenic CO$_2$ emissions. The importance of predicting carbon fluxes has led to the emerging field of data-driven carbon flux…

Machine Learning · Computer Science 2025-03-25 Matthew Fortier , Mats L. Richter , Oliver Sonnentag , Chris Pal

Crop biomass, a critical indicator of plant growth, health, and productivity, is invaluable for crop breeding programs and agronomic research. However, the accurate and scalable quantification of crop biomass remains inaccessible due to…

Computer Vision and Pattern Recognition · Computer Science 2024-09-16 Xuesong Li , Zeeshan Hayder , Ali Zia , Connor Cassidy , Shiming Liu , Warwick Stiller , Eric Stone , Warren Conaty , Lars Petersson , Vivien Rolland

Understanding soil is fundamental to agriculture, carbon cycling, and environmental sustainability, yet progress is limited by fragmented and heterogeneous datasets that constrain modeling to small-scale predictive settings rather than…

Machine Learning · Computer Science 2026-05-11 Kuangdai Leng , Simon Jeffery , Panos Panagos , Tarje Nissen-Meyer

We present the MULTIMODAL UNIVERSE, a large-scale multimodal dataset of scientific astronomical data, compiled specifically to facilitate machine learning research. Overall, the MULTIMODAL UNIVERSE contains hundreds of millions of…

Forest monitoring and education are key to forest protection, education and management, which is an effective way to measure the progress of a country's forest and climate commitments. Due to the lack of a large-scale wild forest monitoring…

Graphics · Computer Science 2024-02-19 Yawen Lu , Yunhan Huang , Su Sun , Tansi Zhang , Xuewen Zhang , Songlin Fei , Yingjie Chen

Increasing interest in the acquisition of biotic and abiotic resources from within the deep sea (e.g. fisheries, oil-gas extraction, and mining) urgently imposes the development of novel monitoring technologies, beyond the traditional…