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Rapid sequencing of individual human genome is prerequisite to genomic medicine, where diseases will be prevented by preemptive cures. Quantum-mechanical tunneling through single-stranded DNA in a solid-state nanopore has been proposed for…

The recent emergence of Distributed Acoustic Sensing (DAS) technology has facilitated the effective capture of traffic-induced seismic data. The traffic-induced seismic wave is a prominent contributor to urban vibrations and contain crucial…

Geophysics · Physics 2024-09-17 Xi Wang , Xin Liu , Songming Zhu , Zhanwen Li , Lina Gao

Hybrid attention architectures are becoming an increasingly important paradigm for improving LLM inference efficiency while preserving model quality, making hybrid architecture design a central problem. Existing designs often rely on manual…

Machine Learning · Computer Science 2026-05-21 Weizhe Chen , Miao Zhang , Junpeng Jiang , Yaping Li , Weili Guan , Liqiang Nie

Hashing methods have been widely used for applications of large-scale image retrieval and classification. Non-deep hashing methods using handcrafted features have been significantly outperformed by deep hashing methods due to their better…

Computer Vision and Pattern Recognition · Computer Science 2017-07-10 Jingkuan Song , Tao He , Hangbo Fan , Lianli Gao

In this study, we propose an innovative dynamic classification algorithm aimed at achieving zero missed detections and minimal false positives,acritical in safety-critical domains (e.g., medical diagnostics) where undetected cases risk…

Machine Learning · Computer Science 2025-06-02 Ziyuan Zhong , Junyang Zhou

The dynamic of complex ordering systems with active rotational degrees of freedom exemplified by protein self-assembly is explored using a machine learning workflow that combines deep learning-based semantic segmentation and rotationally…

Soft Condensed Matter · Physics 2021-04-26 Sergei V. Kalinin , Shuai Zhang , Mani Valleti , Harley Pyles , David Baker , James J. De Yoreo , Maxim Ziatdinov

Automatic classification of pests and plants (both healthy and diseased) is of paramount importance in agriculture to improve yield. Conventional deep learning models based on convolutional neural networks require thousands of labeled…

Computer Vision and Pattern Recognition · Computer Science 2021-09-22 Sai Vidyaranya Nuthalapati , Anirudh Tunga

In unsupervised learning, there is no apparent straightforward cost function that can capture the significant factors of variations and similarities. Since natural systems have smooth dynamics, an opportunity is lost if an unsupervised…

Machine Learning · Computer Science 2020-01-06 Nairouz Mrabah , Naimul Mefraz Khan , Riadh Ksantini , Zied Lachiri

Unsupervised clustering algorithm can effectively reduce the dimension of high-dimensional unlabeled data, thus reducing the time and space complexity of data processing. However, the traditional clustering algorithm needs to set the upper…

Machine Learning · Computer Science 2022-01-17 Zecang Gu , Xiaoqi Sun , Yuan Sun , Fuquan Zhang

Image clustering is a particularly challenging computer vision task, which aims to generate annotations without human supervision. Recent advances focus on the use of self-supervised learning strategies in image clustering, by first…

Computer Vision and Pattern Recognition · Computer Science 2024-09-30 Foivos Ntelemis , Yaochu Jin , Spencer A. Thomas

Understanding protein dynamics are essential for deciphering protein functional mechanisms and developing molecular therapies. However, the complex high-dimensional dynamics and interatomic interactions of biological processes pose…

Quantitative Methods · Quantitative Biology 2025-05-15 Tiexin Qin , Mengxu Zhu , Chunyang Li , Terry Lyons , Hong Yan , Haoliang Li

Classification algorithms to mine data stream have been extensively studied in recent years. However, a lot of these algorithms are designed for supervised learning which requires labeled instances. Nevertheless, the labeling of the data is…

We present a self-supervised method to disentangle factors of variation in high-dimensional data that does not rely on prior knowledge of the underlying variation profile (e.g., no assumptions on the number or distribution of the individual…

Machine Learning · Computer Science 2022-09-23 Eric Yeats , Frank Liu , David Womble , Hai Li

Fluorescence microscopy allows for a detailed inspection of cells, cellular networks, and anatomical landmarks by staining with a variety of carefully-selected markers visualized as color channels. Quantitative characterization of…

Computer Vision and Pattern Recognition · Computer Science 2021-08-26 Alvaro Gomariz , Tiziano Portenier , Patrick M. Helbling , Stephan Isringhausen , Ute Suessbier , César Nombela-Arrieta , Orcun Goksel

Filtering is concerned with the sequential estimation of the state, and uncertainties, of a Markovian system, given noisy observations. It is particularly difficult to achieve accurate filtering in complex dynamical systems, such as those…

Probability · Mathematics 2015-12-14 Wonjung Lee , Andrew Stuart

We propose the factorized action variational autoencoder (FAVAE), a state-of-the-art generative model for learning disentangled and interpretable representations from sequential data via the information bottleneck without supervision. The…

Machine Learning · Statistics 2019-05-31 Masanori Yamada , Heecheol Kim , Kosuke Miyoshi , Hiroshi Yamakawa

In this paper, we introduce a modular deep neural network (DNN) framework for data-driven reduced order modeling of dynamical systems relevant to fluid flows. We propose various deep neural network architectures which numerically predict…

Computational Physics · Physics 2019-09-04 S. Pawar , S. M. Rahman , H. Vaddireddy , O. San , A. Rasheed , P. Vedula

Single-cell RNA sequencing (scRNA-seq) enables the study of cellular heterogeneity. Yet, clustering accuracy, and with it downstream analyses based on cell labels, remain challenging due to measurement noise and biological variability. In…

Machine Learning · Computer Science 2026-03-03 Dominik Meier , Shixing Yu , Sagnik Nandy , Promit Ghosal , Kyra Gan

Fast noninvasive probing of spatially varying decorrelating events, such as cerebral blood flow beneath the human skull, is an essential task in various scientific and clinical settings. One of the primary optical techniques used is diffuse…

Genome editing allows scientists to change an organism's DNA. One promising genome editing protocol, already validated in living organisms, is based on clustered regularly interspaced short palindromic repeats (CRISPR)/Cas protein-nucleic…

Biological Physics · Physics 2019-07-25 Angana Ray , Rosa Di Felice