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Identification of individual cells within heterogeneous populations is essential for biomedical research and clinical diagnostics. Conventional labeling-based sorting methods, such as fluorescence-activated cell sorting and…

Radio-frequency dosimetry is an important process in human safety and for compliance of related products. Recently, computational human models generated from medical images have often been used for such assessment, especially to consider…

Machine Learning · Computer Science 2020-04-29 Essam A. Rashed , Yinliang Diao , Akimasa Hirata

Modern single-cell flow and mass cytometry technologies measure the expression of several proteins of the individual cells within a blood or tissue sample. Each profiled biological sample is thus represented by a set of hundreds of…

Machine Learning · Computer Science 2022-06-29 Siyuan Shan , Vishal Baskaran , Haidong Yi , Jolene Ranek , Natalie Stanley , Junier Oliva

The clustering of data into physically meaningful subsets often requires assumptions regarding the number, size, or shape of the subgroups. Here, we present a new method, simultaneous coherent structure coloring (sCSC), which accomplishes…

Machine Learning · Statistics 2019-11-26 Brooke E. Husic , Kristy L. Schlueter-Kuck , John O. Dabiri

Single-cell RNA sequencing (scRNA-seq) is a fast growing approach to measure the genome-wide transcriptome of many individual cells in parallel, but results in noisy data with many dropout events. Existing methods to learn molecular…

Quantitative Methods · Quantitative Biology 2018-02-27 Beyrem Khalfaoui , Jean-Philippe Vert

We propose Deep Closed-Form Subspace Clustering (DCFSC), a new embarrassingly simple model for subspace clustering with learning non-linear mapping. Compared with the previous deep subspace clustering (DSC) techniques, our DCFSC does not…

Computer Vision and Pattern Recognition · Computer Science 2019-08-27 Junghoon Seo , Jamyoung Koo , Taegyun Jeon

Machine- and deep-learning approaches for biological sequences depend critically on transforming raw DNA, RNA, and protein FASTA files into informative numerical representations. However, this process is often fragmented across multiple…

Genomics · Quantitative Biology 2025-12-01 Hamid Ismail , Marwan Bikdash

Deep neural networks (DNNs) have become core computation components within low latency Function as a Service (FaaS) prediction pipelines: including image recognition, object detection, natural language processing, speech synthesis, and…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-11-19 Abdul Dakkak , Cheng Li , Simon Garcia de Gonzalo , Jinjun Xiong , Wen-mei Hwu

The detection of single molecules has facilitated many advances in life- and material-sciences. Commonly, it founds on the fluorescence detection of single molecules, which are for example attached to the structures under study. For…

The boom of DL technology leads to massive DL models built and shared, which facilitates the acquisition and reuse of DL models. For a given task, we encounter multiple DL models available with the same functionality, which are considered…

Software Engineering · Computer Science 2021-03-10 Linghan Meng , Yanhui Li , Lin Chen , Zhi Wang , Di Wu , Yuming Zhou , Baowen Xu

Conventionally, model-based reinforcement learning (MBRL) aims to learn a global model for the dynamics of the environment. A good model can potentially enable planning algorithms to generate a large variety of behaviors and solve diverse…

Machine Learning · Computer Science 2020-02-18 Archit Sharma , Shixiang Gu , Sergey Levine , Vikash Kumar , Karol Hausman

Creating virtual humans with embodied, human-like perceptual and actuation constraints has the promise to provide an integrated simulation platform for many scientific and engineering applications. We present Dynamic and Autonomous…

Graphics · Computer Science 2021-09-02 Yifeng Jiang , Michelle Guo , Jiangshan Li , Ioannis Exarchos , Jiajun Wu , C. Karen Liu

Sampling from unnormalized target distributions is a fundamental yet challenging task in machine learning and statistics. Existing sampling algorithms typically require many iterative steps to produce high-quality samples, leading to high…

Machine Learning · Computer Science 2025-02-17 Pascal Jutras-Dubé , Patrick Pynadath , Ruqi Zhang

Atomic structure analysis of crystalline materials is a paramount endeavor in both chemical and material sciences. This sophisticated technique necessitates not only a solid foundation in crystallography but also a profound comprehension of…

Machine Learning · Computer Science 2026-04-27 Kaipeng Zheng , Weiran Huang , Wanli Ouyang , Han-Sen Zhong , Yuqiang Li

In the literature, coarse-to-fine or scale-recurrent approach i.e. progressively restoring a clean image from its low-resolution versions has been successfully employed for single image deblurring. However, a major disadvantage of existing…

Computer Vision and Pattern Recognition · Computer Science 2021-12-14 Praveen Kandula , Rajagopalan. A. N

This study introduces a hybrid approach integrating advanced plasmonic nanomaterials and machine learning (ML) for high-precision biomolecule detection. We leverage aluminum concave nanocubes (AlCNCs) as an innovative plasmonic substrate to…

Biomolecules · Quantitative Biology 2025-07-11 Mohammad Mohammadi , Sima Najafzadehkhoei , George Vega Yon , Yunshan Wang

In stress field analysis, the finite element analysis is a crucial approach, in which the mesh-density has a significant impact on the results. High mesh density usually contributes authentic to simulation results but costs more computing…

Computational Engineering, Finance, and Science · Computer Science 2021-04-20 Qingfeng Xu , Zhenguo Nie , Handing Xu , Haosu Zhou , Xinjun Liu

Deep clustering has gained significant attention due to its capability in learning clustering-friendly representations without labeled data. However, previous deep clustering methods tend to treat all samples equally, which neglect the…

Computer Vision and Pattern Recognition · Computer Science 2024-09-23 Hai-Xin Zhang , Dong Huang

We investigate the systematic mechanism for designing fast mixing Markov chain Monte Carlo algorithms to sample from discrete point processes under the Dobrushin uniqueness condition for Gibbs measures. Discrete point processes are defined…

Machine Learning · Statistics 2015-06-09 Patrick Rebeschini , Amin Karbasi

With the applicability of optical fiber-based distributed acoustic sensing (DAS) systems, effective signal processing and analysis approaches are needed to promote its popularization in the field of intelligent transportation systems (ITS).…

Signal Processing · Electrical Eng. & Systems 2025-06-19 Linlin Wang , Wei Wang , Dezhao Wang , Shanwen Wang