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Systematic reviews in medicine play a critical role in evidence-based decision-making by aggregating findings from multiple studies. A central bottleneck in automating this process is extracting numeric evidence and determining study-level…

Artificial Intelligence · Computer Science 2026-01-26 Massimiliano Pronesti , Michela Lorandi , Paul Flanagan , Oisin Redmond , Anya Belz , Yufang Hou

Document-Level Biomedical Relation Extraction (Bio-RE) aims to identify relations between biomedical entities within extensive texts, serving as a crucial subfield of biomedical text mining. Existing Bio-RE methods struggle with…

Computation and Language · Computer Science 2025-01-10 Yufei Shang , Yanrong Guo , Shijie Hao , Richang Hong

Evidence plays a crucial role in any biomedical research narrative, providing justification for some claims and refutation for others. We seek to build models of scientific argument using information extraction methods from full-text…

Computation and Language · Computer Science 2025-05-19 Xiangci Li , Gully Burns , Nanyun Peng

Recent advances in the healthcare industry have led to an abundance of unstructured data, making it challenging to perform tasks such as efficient and accurate information retrieval at scale. Our work offers an all-in-one scalable solution…

Information Retrieval · Computer Science 2023-02-15 Shreya Saxena , Raj Sangani , Siva Prasad , Shubham Kumar , Mihir Athale , Rohan Awhad , Vishal Vaddina

Biomedical knowledge resources often either preserve evidence as unstructured text or compress it into flat triples that omit study design, provenance, and quantitative support. Here we present EvidenceNet, a disease-specific dataset of…

Computational Engineering, Finance, and Science · Computer Science 2026-04-15 Chang Zong , Sicheng Lv , Si-tu Xue , Huilin Zheng , Jian Wan , Lei Zhang

Researchers produce thousands of scholarly documents containing valuable technical knowledge. The community faces the laborious task of reading these documents to identify, extract, and synthesize information. To automate information…

Computation and Language · Computer Science 2023-12-13 Tavish McDonald , Brian Tsan , Amar Saini , Juanita Ordonez , Luis Gutierrez , Phan Nguyen , Blake Mason , Brenda Ng

Document-level relation extraction (DocRE) aims to extract relations between entities from unstructured document text. Compared to sentence-level relation extraction, it requires more complex semantic understanding from a broader text…

Computation and Language · Computer Science 2024-09-10 Yanxu Mao , Xiaohui Chen , Peipei Liu , Tiehan Cui , Zuhui Yue , Zheng Li

In today's digital world, seeking answers to health questions on the Internet is a common practice. However, existing question answering (QA) systems often rely on using pre-selected and annotated evidence documents, thus making them…

Computation and Language · Computer Science 2024-04-15 Juraj Vladika , Florian Matthes

Document-level relation extraction (DocRE) aims to extract semantic relations among entity pairs in a document. Typical DocRE methods blindly take the full document as input, while a subset of the sentences in the document, noted as the…

Computation and Language · Computer Science 2022-03-08 Yiqing Xie , Jiaming Shen , Sha Li , Yuning Mao , Jiawei Han

Medical relation extraction discovers relations between entity mentions in text, such as research articles. For this task, dependency syntax has been recognized as a crucial source of features. Yet in the medical domain, 1-best parse trees…

Computation and Language · Computer Science 2019-12-17 Linfeng Song , Yue Zhang , Daniel Gildea , Mo Yu , Zhiguo Wang , Jinsong Su

Clinical evidence encompasses the associations and impacts between patients, interventions (such as drugs or physiotherapy), problems, and outcomes. The goal of recommending clinical evidence is to provide medical practitioners with…

Computation and Language · Computer Science 2023-04-05 Maolin Luo , Xiang Zhang

Document-level relation extraction (Doc-RE) aims to extract relations between entities across multiple sentences. Therefore, Doc-RE requires more comprehensive reasoning abilities like humans, involving complex cross-sentence interactions…

Computation and Language · Computer Science 2025-08-05 Chengcheng Mai , Yuxiang Wang , Ziyu Gong , Hanxiang Wang , Yihua Huang

Medical Relation Extraction (MRE) task aims to extract relations between entities in medical texts. Traditional relation extraction methods achieve impressive success by exploring the syntactic information, e.g., dependency tree. However,…

Computation and Language · Computer Science 2022-08-30 Yifan Jin , Jiangmeng Li , Zheng Lian , Chengbo Jiao , Xiaohui Hu

Scientific fact-checking aims to determine the veracity of scientific claims by retrieving and analysing evidence from research literature. The problem is inherently more complex than general fact-checking since it must accommodate the…

Information Retrieval · Computer Science 2025-08-18 Xingyu Deng , Xi Wang , Mark Stevenson

Document-level Relation Extraction (DocRE) involves identifying relations between entities across multiple sentences in a document. Evidence sentences, crucial for precise entity pair relationships identification, enhance focus on essential…

Computation and Language · Computer Science 2025-04-10 Khai Phan Tran , Xue Li

With the explosive growth of scientific publications, making the synthesis of scientific knowledge and fact checking becomes an increasingly complex task. In this paper, we propose a multi-task approach for verifying the scientific…

Computation and Language · Computer Science 2022-05-02 Loïc Rakotoson , Charles Letaillieur , Sylvain Massip , Fréjus Laleye

Claims are a fundamental unit of scientific discourse. The exponential growth in the number of scientific publications makes automatic claim extraction an important problem for researchers who are overwhelmed by this information overload.…

Computation and Language · Computer Science 2020-01-20 Titipat Achakulvisut , Chandra Bhagavatula , Daniel Acuna , Konrad Kording

Biomedical evidence synthesis relies on accurate extraction of methodological, laboratory, and outcome variables from full-text research articles, yet these variables are embedded in complex scientific PDFs that make manual abstraction…

Computation and Language · Computer Science 2026-01-22 Pouria Mortezaagha , Joseph Shaw , Bowen Sun , Arya Rahgozar

Recent transformer-based approaches demonstrate promising results on relational scientific information extraction. Existing datasets focus on high-level description of how research is carried out. Instead we focus on the subtleties of how…

Computation and Language · Computer Science 2021-09-23 Ian H. Magnusson , Scott E. Friedman

Non-textual components such as charts, diagrams and tables provide key information in many scientific documents, but the lack of large labeled datasets has impeded the development of data-driven methods for scientific figure extraction. In…

Digital Libraries · Computer Science 2018-06-01 Noah Siegel , Nicholas Lourie , Russell Power , Waleed Ammar
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