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The best evidence concerning comparative treatment effectiveness comes from clinical trials, the results of which are reported in unstructured articles. Medical experts must manually extract information from articles to inform…

Computation and Language · Computer Science 2022-01-11 Benjamin E. Nye , Jay DeYoung , Eric Lehman , Ani Nenkova , Iain J. Marshall , Byron C. Wallace

Document-level Relation Extraction (DocRE) is a more challenging task compared to its sentence-level counterpart. It aims to extract relations from multiple sentences at once. In this paper, we propose a semi-supervised framework for DocRE…

Computation and Language · Computer Science 2022-03-22 Qingyu Tan , Ruidan He , Lidong Bing , Hwee Tou Ng

Identification of appropriate supporting evidence is critical to the success of scientific fact checking. However, existing approaches rely on off-the-shelf Information Retrieval algorithms that rank documents based on relevance rather than…

Information Retrieval · Computer Science 2025-08-18 Xingyu Deng , Xi Wang , Mark Stevenson

This paper presents an unsupervised extractive approach to summarize scientific long documents based on the Information Bottleneck principle. Inspired by previous work which uses the Information Bottleneck principle for sentence…

Computation and Language · Computer Science 2021-10-05 Jiaxin Ju , Ming Liu , Huan Yee Koh , Yuan Jin , Lan Du , Shirui Pan

This study explores three approaches to processing table data in scientific papers to enhance extractive question answering and develop a software tool for the systematic review process. The methods evaluated include: (1) Optical Character…

Information Retrieval · Computer Science 2025-08-27 Dongyoun Kim , Hyung-do Choi , Youngsun Jang , John Kim

To improve the reliability of Large Language Models (LLMs) in clinical applications, retrieval-augmented generation (RAG) is extensively applied to provide factual medical knowledge. However, beyond general medical knowledge from open-ended…

Computation and Language · Computer Science 2025-05-29 Justice Ou , Tinglin Huang , Yilun Zhao , Ziyang Yu , Peiqing Lu , Rex Ying

Automatically extracting key information from scientific documents has the potential to help scientists work more efficiently and accelerate the pace of scientific progress. Prior work has considered extracting document-level entity…

Digital Libraries · Computer Science 2021-06-04 Vijay Viswanathan , Graham Neubig , Pengfei Liu

Commonsense question answering aims to answer questions which require background knowledge that is not explicitly expressed in the question. The key challenge is how to obtain evidence from external knowledge and make predictions based on…

Computation and Language · Computer Science 2020-06-11 Shangwen Lv , Daya Guo , Jingjing Xu , Duyu Tang , Nan Duan , Ming Gong , Linjun Shou , Daxin Jiang , Guihong Cao , Songlin Hu

In clinical research and clinical decision-making, it is important to know if a study changes or only supports the current standards of care for specific disease management. We define such a change as transformative and a support as…

Computation and Language · Computer Science 2021-12-28 Xuanyu Shi , Jian Du

Document-level relation extraction (DocRE) is the task of identifying all relations between each entity pair in a document. Evidence, defined as sentences containing clues for the relationship between an entity pair, has been shown to help…

Computation and Language · Computer Science 2023-02-20 Youmi Ma , An Wang , Naoaki Okazaki

In this work, we aim at developing an extractive summarizer in the multi-document setting. We implement a rank based sentence selection using continuous vector representations along with key-phrases. Furthermore, we propose a model to…

Computation and Language · Computer Science 2020-06-26 Mir Tafseer Nayeem , Yllias Chali

Document Visual Question Answering (DocVQA) faces dual challenges in processing lengthy multimodal documents (text, images, tables) and performing cross-modal reasoning. Current document retrieval-augmented generation (DocRAG) methods…

Information Retrieval · Computer Science 2025-11-10 Kuicai Dong , Yujing Chang , Shijie Huang , Yasheng Wang , Ruiming Tang , Yong Liu

The rapid advancement of large language models (LLMs) has opened new boundaries in the extraction and synthesis of medical knowledge, particularly within evidence synthesis. This paper reviews the state-of-the-art applications of LLMs in…

Evidence-based medicine, the practice in which healthcare professionals refer to the best available evidence when making decisions, forms the foundation of modern healthcare. However, it relies on labour-intensive systematic reviews, where…

Computation and Language · Computer Science 2021-12-13 Jetsun Whitton , Anthony Hunter

Scientific paper generation requires document-level planning and factual grounding, but current large language models, despite their strong local fluency, often fail in global structure, input coverage, and citation consistency. We present…

Computation and Language · Computer Science 2026-01-16 Yilin Bao , Ziyao He , Zayden Yang

The growing use of large language models (LLMs) for biomedical question answering raises concerns about the accuracy and evidentiary support of their responses. To address this, we present Answered with Evidence, a framework for evaluating…

Machine Learning · Computer Science 2025-07-08 Julian D Baldwin , Christina Dinh , Arjun Mukerji , Neil Sanghavi , Saurabh Gombar

As an essential task in information extraction (IE), Event-Event Causal Relation Extraction (ECRE) aims to identify and classify the causal relationships between event mentions in natural language texts. However, existing research on ECRE…

Computation and Language · Computer Science 2024-10-08 Zimu Wang , Lei Xia , Wei Wang , Xinya Du

Generative pre-trained transformer (GPT) models have shown promise in clinical entity and relation extraction tasks because of their precise extraction and contextual understanding capability. In this work, we further leverage the Unified…

Computation and Language · Computer Science 2024-07-16 Kriti Bhattarai , Inez Y. Oh , Zachary B. Abrams , Albert M. Lai

We study the task of automatically finding evidence relevant to hypotheses in biomedical papers. Finding relevant evidence is an important step when researchers investigate scientific hypotheses. We introduce EvidenceBench to measure models…

Remarkable success has been achieved in the last few years on some limited machine reading comprehension (MRC) tasks. However, it is still difficult to interpret the predictions of existing MRC models. In this paper, we focus on extracting…

Computation and Language · Computer Science 2019-09-25 Hai Wang , Dian Yu , Kai Sun , Jianshu Chen , Dong Yu , David McAllester , Dan Roth