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In the medical field, current ECG signal analysis approaches rely on supervised deep neural networks trained for specific tasks that require substantial amounts of labeled data. However, our paper introduces ECGBERT, a self-supervised…

Signal Processing · Electrical Eng. & Systems 2023-06-13 Seokmin Choi , Sajad Mousavi , Phillip Si , Haben G. Yhdego , Fatemeh Khadem , Fatemeh Afghah

Since 2017, the Transformer-based models play critical roles in various downstream Natural Language Processing tasks. However, a common limitation of the attention mechanism utilized in Transformer Encoder is that it cannot automatically…

Computation and Language · Computer Science 2022-04-20 Ziyang Luo , Yadong Xi , Jing Ma , Zhiwei Yang , Xiaoxi Mao , Changjie Fan , Rongsheng Zhang

While deep learning has revolutionized research and applications in NLP and computer vision, this has not yet been the case for behavioral modeling and behavioral health applications. This is because the domain's datasets are smaller, have…

Machine Learning · Computer Science 2021-07-14 Mike A. Merrill , Tim Althoff

In many machine learning tasks, learning a good representation of the data can be the key to building a well-performant solution. This is because most learning algorithms operate with the features in order to find models for the data. For…

Machine Learning · Computer Science 2020-05-22 David Charte , Francisco Charte , María J. del Jesus , Francisco Herrera

Transformer-based models have led to significant innovation in classical and practical subjects as varied as speech processing, natural language processing, and computer vision. On top of the Transformer, attention-based end-to-end…

Computation and Language · Computer Science 2022-05-19 Fu-Hao Yu , Kuan-Yu Chen

Pre-trained language models have been shown to encode linguistic structures, e.g. dependency and constituency parse trees, in their embeddings while being trained on unsupervised loss functions like masked language modeling. Some doubts…

Computation and Language · Computer Science 2023-10-17 Haoyu Zhao , Abhishek Panigrahi , Rong Ge , Sanjeev Arora

Blind face restoration is a highly ill-posed problem that often requires auxiliary guidance to 1) improve the mapping from degraded inputs to desired outputs, or 2) complement high-quality details lost in the inputs. In this paper, we…

Computer Vision and Pattern Recognition · Computer Science 2022-11-02 Shangchen Zhou , Kelvin C. K. Chan , Chongyi Li , Chen Change Loy

Transformers are powerful for sequence modeling. Nearly all state-of-the-art language models and pre-trained language models are based on the Transformer architecture. However, it distinguishes sequential tokens only with the token position…

Computation and Language · Computer Science 2020-12-17 He Bai , Peng Shi , Jimmy Lin , Yuqing Xie , Luchen Tan , Kun Xiong , Wen Gao , Ming Li

Large, pre-trained neural networks consisting of self-attention layers (transformers) have recently achieved state-of-the-art results on several speech emotion recognition (SER) datasets. These models are typically pre-trained in…

Encrypted traffic classification requires discriminative and robust traffic representation captured from content-invisible and imbalanced traffic data for accurate classification, which is challenging but indispensable to achieve network…

Cryptography and Security · Computer Science 2022-02-22 Xinjie Lin , Gang Xiong , Gaopeng Gou , Zhen Li , Junzheng Shi , Jing Yu

BERT, which stands for Bidirectional Encoder Representations from Transformers, is a recently introduced language representation model based upon the transfer learning paradigm. We extend its fine-tuning procedure to address one of its…

Computation and Language · Computer Science 2019-10-25 Raghavendra Pappagari , Piotr Żelasko , Jesús Villalba , Yishay Carmiel , Najim Dehak

Synthesizing medical images, such as PET, is a challenging task due to the fact that the intensity range is much wider and denser than those in photographs and digital renderings and are often heavily biased toward zero. Above all,…

In this work we propose for the first time a transformer-based framework for unsupervised representation learning of multivariate time series. Pre-trained models can be potentially used for downstream tasks such as regression and…

Machine Learning · Computer Science 2020-12-10 George Zerveas , Srideepika Jayaraman , Dhaval Patel , Anuradha Bhamidipaty , Carsten Eickhoff

Metagenomic data, comprising mixed multi-species genomes, are prevalent in diverse environments like oceans and soils, significantly impacting human health and ecological functions. However, current research relies on K-mer, which limits…

Genomics · Quantitative Biology 2024-12-30 ChenRui Duan , Zelin Zang , Yongjie Xu , Hang He , Zihan Liu , Siyuan Li , Zijia Song , Ju-Sheng Zheng , Stan Z. Li

Transcription factors are proteins that regulate the expression of genes by binding to specific genomic regions known as Transcription Factor Binding Sites (TFBSs), typically located in the promoter regions of those genes. Accurate…

Machine Learning · Computer Science 2025-02-04 Nimisha Ghosh , Pratik Dutta , Daniele Santoni

Transformer-based models have delivered impressive results on many tasks, particularly vision and language tasks. In many model training situations, conventional configurations are typically adopted. For example, we often set the base model…

Machine Learning · Computer Science 2023-05-19 Fuzhao Xue , Jianghai Chen , Aixin Sun , Xiaozhe Ren , Zangwei Zheng , Xiaoxin He , Yongming Chen , Xin Jiang , Yang You

A central challenge in high-energy nuclear physics is to extract informative features from the high-dimensional final-state data of heavy-ion collisions (HIC) in order to enable reliable downstream analyses. Traditional approaches often…

High Energy Physics - Phenomenology · Physics 2025-10-09 Jing-Zong Zhang , Shuang Guo , Li-Lin Zhu , Lingxiao Wang , Guo-Liang Ma

Bioinformatics tools have been developed to interpret gene expression data at the gene set level, and these gene set based analyses improve the biologists' capability to discover functional relevance of their experiment design. While…

Machine Learning · Statistics 2019-01-01 Hung-I Harry Chen , Yu-Chiao Chiu , Tinghe Zhang , Songyao Zhang , Yufei Huang , Yidong Chen

Medication recommendation is an important healthcare application. It is commonly formulated as a temporal prediction task. Hence, most existing works only utilize longitudinal electronic health records (EHRs) from a small number of patients…

Artificial Intelligence · Computer Science 2019-11-28 Junyuan Shang , Tengfei Ma , Cao Xiao , Jimeng Sun

Self-supervised learning has emerged as a highly effective approach in the fields of natural language processing and computer vision. It is also applicable to brain signals such as electroencephalography (EEG) data, given the abundance of…

Signal Processing · Electrical Eng. & Systems 2024-01-22 Yuqi Chen , Kan Ren , Kaitao Song , Yansen Wang , Yifan Wang , Dongsheng Li , Lili Qiu