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Two-dimensional data maps can visually reveal information about the relations between data instances. Popular techniques to construct data maps are t-SNE and UMAP. The resulting point-based visualizations, though, provide information only…

Information Retrieval · Computer Science 2021-10-04 Primož Godec , Nikola Ðukić , Ajda Pretnar , Vesna Tanko , Lan Žagar , Blaž Zupan

Mapper, a topological algorithm, is frequently used as an exploratory tool to build a graphical representation of data. This representation can help to gain a better understanding of the intrinsic shape of high-dimensional genomic data and…

Genomics · Quantitative Biology 2023-07-19 Erik J. Amézquita , Farzana Nasrin , Kathleen M. Storey , Masato Yoshizawa

Mapper is an algorithm that summarizes the topological information contained in a dataset and provides an insightful visualization. It takes as input a point cloud which is possibly high-dimensional, a filter function on it and an open…

Algebraic Topology · Mathematics 2019-03-12 Bishal Deb , Ankita Sarkar , Nupur Kumari , Akash Rupela , Piyush Gupta , Balaji Krishnamurthy

We present ShapeVis, a scalable visualization technique for point cloud data inspired from topological data analysis. Our method captures the underlying geometric and topological structure of the data in a compressed graphical…

Machine Learning · Computer Science 2020-01-22 Nupur Kumari , Siddarth R. , Akash Rupela , Piyush Gupta , Balaji Krishnamurthy

Rapid visualization of large-scale spatial vector data is a long-standing challenge in Geographic Information Science. In existing methods, the computation overheads grow rapidly with data volumes, leading to the incapability of providing…

Graphics · Computer Science 2021-01-26 Mengyu Ma , Ye Wu , Xue Ouyang , Luo Chen , Jun Li , Ning Jing

This paper investigates new data exploration experiences that enable blind users to interact with statistical data visualizations$-$bar plots, heat maps, box plots, and scatter plots$-$leveraging multimodal data representations. In addition…

Human-Computer Interaction · Computer Science 2024-03-04 JooYoung Seo , Yilin Xia , Bongshin Lee , Sean McCurry , Yu Jun Yam

In recent years, following FAIR and open data principles, the number of available big data including biomedical data has been increased exponentially. In order to extract knowledge, these data should be curated, integrated, and semantically…

Databases · Computer Science 2018-11-06 Samaneh Jozashoori , Tatiana Novikova , Maria-Esther Vidal

Many data sets, crucial for today's applications, consist essentially of enormous networks, containing millions or even billions of elements. Having the possibility of visualizing such networks is of paramount importance. We propose an…

Data Structures and Algorithms · Computer Science 2023-07-25 Giuseppe Di Battista , Fabrizio Grosso , Silvia Montorselli , Maurizio Patrignani

Despite data's crucial role in machine learning, most existing tools and research tend to focus on systems on top of existing data rather than how to interpret and manipulate data. In this paper, we propose DataLab, a unified data-oriented…

Machine Learning · Computer Science 2022-02-28 Yang Xiao , Jinlan Fu , Weizhe Yuan , Vijay Viswanathan , Zhoumianze Liu , Yixin Liu , Graham Neubig , Pengfei Liu

The increasingly popular light sheet microscopy techniques generate very large 3D time-lapse recordings of living biological specimen. The necessity to make large volumetric datasets available for interactive visualization and analysis has…

Quantitative Methods · Quantitative Biology 2014-12-02 Tobias Pietzsch , Stephan Saalfeld , Stephan Preibisch , Pavel Tomancak

Virtual reality (VR) enables data visualization in an immersive and engaging manner, and it can be used for creating ways to explore scientific data. Here, we use VR for visualization of 3D histology data, creating a novel interface for…

Graphics · Computer Science 2022-01-31 Kaisa Liimatainen , Leena Latonen , Masi Valkonen , Kimmo Kartasalo , Pekka Ruusuvuori

Software visualization tools can facilitate program comprehension by providing visual metaphors, or abstractions that reduce the amount of textual data that needs to be processed mentally. One way they do this is by enabling developers to…

Software Engineering · Computer Science 2025-10-02 Malte Hansen , Jens Bamberg , Noe Baumann , Wilhelm Hasselbring

DataViz3D is an innovative online software that transforms complex datasets into interactive 3D spatial models using holographic technology. This tool enables users to generate scatter plot within a 3D space, accurately mapped to the XYZ…

Computer Vision and Pattern Recognition · Computer Science 2024-01-22 Jinli Duan

Running machine learning analytics over geographically distributed datasets is a rapidly arising problem in the world of data management policies ensuring privacy and data security. Visualizing high dimensional data using tools such as…

Distributed, Parallel, and Cluster Computing · Computer Science 2020-11-13 Viska Wei , Nikita Ivkin , Vladimir Braverman , Alexander Szalay

The effective visualization of genomic data is crucial for exploring and interpreting complex relationships within and across genes and genomes. Despite advances in developing dedicated bioinformatics software, common visualization tools…

Genomics · Quantitative Biology 2024-11-22 Thomas Hackl , Markus Ankenbrand , Bart van Adrichem , David Wilkins , Kristina Haslinger

Scientists increasingly recognize the importance of providing rich, standards-adherent metadata to describe their experimental results. Despite the availability of sophisticated tools to assist in the process of data annotation,…

Scientific applications produce a huge amount of data, which imposes serious management and analysis challenges. In particular, limitations in current database management systems prevent their adoption in simulation applications, in which…

Databases · Computer Science 2019-03-18 Hermano Lustosa , Fabio Porto

Thermal Desktop (TD) is an industry-standard thermal analysis tool used to create and analyze thermal models for landers, rovers, spacecraft, and instrument payloads. Currently, limited software exists to extract and visualize metrics…

Software Engineering · Computer Science 2025-11-12 Lars Olt , Luis Diego Fonseca Flores , Ian Mckinley

In the present work we have selected a collection of statistical and mathematical tools useful for the exploration of multivariate data and we present them in a form that is meant to be particularly accessible to a classically trained…

Statistics Theory · Mathematics 2010-09-01 Magnus Fontes

Scientific data sets continue to increase in both size and complexity. In the past, dedicated graphics systems at supercomputing centers were required to visualize large data sets, but as the price of commodity graphics hardware has dropped…

Instrumentation and Methods for Astrophysics · Physics 2015-05-19 P. R. Gazis , C. Levit , M. J. Way
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