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Clustering techniques are consolidated as a powerful strategy for analyzing the extensive data generated from molecular modeling. In particular, some tools have been developed to cluster configurations from classical simulations with a…

Computational Physics · Physics 2025-07-08 Rafael Bicudo Ribeiro , Henrique Musseli Cezar

DNA storage technology offers new possibilities for addressing massive data storage due to its high storage density, long-term preservation, low maintenance cost, and compact size. To improve the reliability of stored information, base…

Machine Learning · Computer Science 2024-09-24 Bowen Liu , Jiankun Li

State Space Models (SSMs) show significant potential for long-sequence modeling, but their reliance on input order conflicts with the irregular nature of point clouds. Existing approaches often rely on predefined serialization schemes whose…

Computer Vision and Pattern Recognition · Computer Science 2026-04-06 Bin Liu , Chunyang Wang , Xuelian Liu , Ge Zhang

As a pivotal branch of machine learning, manifold learning uncovers the intrinsic low-dimensional structure within complex nonlinear manifolds in high-dimensional space for visualization, classification, clustering, and gaining key…

Machine Learning · Computer Science 2025-09-16 Dehua Peng , Zhipeng Gui , Wenzhang Wei , Fa Li , Jie Gui , Huayi Wu , Jianya Gong

Tandem mass spectrometry (MS/MS) is a high-throughput technology used toidentify the proteins in a complex biological sample, such as a drop of blood. A collection of spectra is generated at the output of the process, each spectrum of which…

Quantitative Methods · Quantitative Biology 2019-09-06 John T. Halloran , David M. Rocke

Aiming to obtain a high-resolution image, pansharpening involves the fusion of a multi-spectral image (MS) and a panchromatic image (PAN), the low-level vision task remaining significant and challenging in contemporary research. Most…

Computer Vision and Pattern Recognition · Computer Science 2025-08-18 Xuanyu Liu , Bonan An

Magnetic Resonance Imaging (MRI) is widely recognized as the most reliable tool for detecting tumors due to its capability to produce detailed images that reveal their presence. However, the accuracy of diagnosis can be compromised when…

Computer Vision and Pattern Recognition · Computer Science 2025-07-18 Zahid Ullah , Dragan Pamucar , Jihie Kim

Deconvolution of cell mixtures in "bulk" transcriptomic samples from homogenate human tissue is important for understanding the pathologies of diseases. However, several experimental and computational challenges remain in developing and…

Other Quantitative Biology · Quantitative Biology 2023-05-12 Sean K. Maden , Sang Ho Kwon , Louise A. Huuki-Myers , Leonardo Collado-Torres , Stephanie C. Hicks , Kristen R. Maynard

Nanobodies are small antibody fragments derived from camelids that selectively bind to antigens. These proteins have marked physicochemical properties that support advanced therapeutics, including treatments for SARS-CoV-2. To realize their…

Quantitative Methods · Quantitative Biology 2021-10-18 Chris McKennan , Zhe Sang , Yi Shi

Graph-level clustering is a fundamental task of data mining, aiming at dividing unlabeled graphs into distinct groups. However, existing deep methods that are limited by pooling have difficulty extracting diverse and complex graph structure…

Machine Learning · Computer Science 2025-04-03 Renda Han , Guangzhen Yao , Wenxin Zhang , Yu Li , Wen Xin , Huajie Lei , Mengfei Li , Zeyu Zhang , Chengze Du , Yahe Tian

Paranasal anomalies are commonly discovered during routine radiological screenings and can present with a wide range of morphological features. This diversity can make it difficult for convolutional neural networks (CNNs) to accurately…

Convolutional Neural Networks (CNNs) have advanced significantly in visual representation learning and recognition. However, they face notable challenges in performance and computational efficiency when dealing with real-world, multi-scale…

Computer Vision and Pattern Recognition · Computer Science 2024-03-28 Wenzhuo Liu , Fei Zhu , Cheng-Lin Liu

In this paper, we study the Nystr{\"o}m type subsampling for large scale kernel methods to reduce the computational complexities of big data. We discuss the multi-penalty regularization scheme based on Nystr{\"o}m type subsampling which is…

Machine Learning · Statistics 2024-04-09 Abhishake Rastogi , Sivananthan Sampath

Multi-scale approach has been used for blind image / video deblurring problems to yield excellent performance for both conventional and recent deep-learning-based state-of-the-art methods. Bicubic down-sampling is a typical choice for…

Computer Vision and Pattern Recognition · Computer Science 2019-03-26 Dongwon Park , Jisoo Kim , Se Young Chun

Fast and accurate MRI image reconstruction from undersampled data is crucial in clinical practice. Deep learning based reconstruction methods have shown promising advances in recent years. However, recovering fine details from undersampled…

Image and Video Processing · Electrical Eng. & Systems 2022-02-23 Eric Z. Chen , Puyang Wang , Xiao Chen , Terrence Chen , Shanhui Sun

Multi-view subspace clustering aims to discover the inherent structure of data by fusing multiple views of complementary information. Most existing methods first extract multiple types of handcrafted features and then learn a joint affinity…

Computer Vision and Pattern Recognition · Computer Science 2024-03-26 Pengfei Zhu , Xinjie Yao , Yu Wang , Binyuan Hui , Dawei Du , Qinghua Hu

As a result of the growing size of Deep Neural Networks (DNNs), the gap to hardware capabilities in terms of memory and compute increases. To effectively compress DNNs, quantization and connection pruning are usually considered. However,…

Machine Learning · Computer Science 2019-06-13 Guenther Schindler , Wolfgang Roth , Franz Pernkopf , Holger Froening

During Deep Brain Stimulation(DBS) surgery for treating Parkinson's disease, one vital task is to detect a specific brain area called the Subthalamic Nucleus(STN) and a sub-territory within the STN called the Dorsolateral Oscillatory…

Signal Processing · Electrical Eng. & Systems 2022-08-24 Ido Cohen , Dan Valsky , Ronen Talmon

Protein phosphorylation provides a dynamic readout of cellular signaling yet remains difficult to detect at low abundance and stoichiometry. Single-molecule surface-enhanced Raman spectroscopy (SM-SERS) using particle-in-pore plasmonic…

Mesoscale and Nanoscale Physics · Physics 2026-04-09 Mulusew W. Yaltaye , Yingqi Zhao , Kuo Zhan , Vahid Farrahi , Jian-An Huang

Cancer is a number of related yet highly heterogeneous diseases. Correct identification of cancer subtypes is critical for clinical decisions. The advance in sequencing technologies has made it possible to study cancer based on abundant…

Applications · Statistics 2018-11-27 Xiaochun Chen , Honggang Wang , Donghui Yan
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